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World Journal of Microbiology & Biotechnology

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https://www.readbyqxmd.com/read/30101403/evidence-of-genetically-diverse-virulent-mating-types-of-phytophthora-capsici-from-capsicum-annum-l
#1
Kiran Nawaz, Ahmad Ali Shahid, Louis Bengyella, Muhammad Nasir Subhani, Muhammad Ali, Waheed Anwar, Sehrish Iftikhar, Shinawar Waseem Ali
Chili pepper (Capsicum annum L.) is an important economic crop that is severely destroyed by the filamentous oomycete Phytophthora capsici. Little is known about this pathogen in key chili pepper farms in Punjab province, Pakistan. We investigated the genetic diversity of P. capsici strains using standard taxonomic and molecular tools, and characterized their colony growth patterns as well as their disease severity on chili pepper plants under the greenhouse conditions. Phylogenetic analysis based on ribosomal DNA (rDNA), β-tubulin and translation elongation factor 1α loci revealed divergent evolution in the population structure of P...
August 12, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30094643/enhanced-biosynthesis-of-phenazine-1-carboxamide-by-pseudomonas-chlororaphis-strains-using-statistical-experimental-designs
#2
Huasong Peng, Jian Tan, Muhammad Bilal, Wei Wang, Hongbo Hu, Xuehong Zhang
Phenazine-1-carboxamide (PCN) is one of the major biocontrol agents produced by plant growth-promoting rhizosphere (PGPR) pseudomonads including Pseudomonas chlororaphis. In this study, a combined strategy of genetic modification and statistical experimental designs was applied to obtain mutants of P. chlororaphis strains with high-yield PCN production. To achieve this, the lon gene was knocked out in wild-type P. chlororaphis HT66 and the breeding mutant P3 strain with a non-scar deletion strategy. The resulting HT66Δlon and P3Δlon mutants produced a significantly higher PCN production in shake-flask cultures which was 5- and  9-folds greater than their native counterparts...
August 9, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30084085/biogenic-synthesis-of-multifunctional-silver-nanoparticles-from-rhodotorula-glutinis-and-rhodotorula-mucilaginosa-antifungal-catalytic-and-cytotoxicity-activities
#3
Francisco A Cunha, Maria da C S O Cunha, Sabrina M da Frota, Eduardo J J Mallmann, Tiago M Freire, Luelc S Costa, Amauri J Paula, Everardo A Menezes, Pierre B A Fechine
Silver nanoparticles (AgNPs) have several technological applications and may be synthetized by chemical, physical and biological methods. Biosynthesis using fungi has a wide enzymatic range and it is easy to handle. However, there are few reports of yeasts with biosynthetic ability to produce stable AgNPs. The purpose of this study was to isolate and identify soil yeasts (Rhodotorula glutinis and Rhodotorula mucilaginosa). After this step, the yeasts were used to obtain AgNPs with catalytic and antifungal activity evaluation...
August 6, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30083971/utilization-of-one-novel-deep-sea-microbial-protease-sin3406-1-in-the-preparation-of-ethyl-s-3-hydroxybutyrate-through-kinetic-resolution
#4
Jinlong Huang, Yongkai Xu, Yun Zhang, Aijun Sun, Yunfeng Hu
One novel protease sin3406-1 was identified from Streptomyces niveus SCSIO 3406, which was isolated from the deep sea of the South China Sea, and heterologously expressed in E. coli BL21(DE3). Protease sin3406-1 was further used as a green biocatalyst in the kinetic resolution of racemic ethyl-3-hydroxybutyrate. After careful process optimization, chiral product ethyl (S)-3-hydroxybutyrate was generated with an enantiomeric excess of over 99% and a conversion rate of up to 50% through direct hydrolysis of inexpensive racemic ethyl-3-hydroxybutyrate catalyzed by sin3406-1...
August 6, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30083963/in-silico-and-in-vivo-analysis-of-signal-peptides-effect-on-recombinant-glucose-oxidase-production-in-nonconventional-yeast-yarrowia-lipolytica
#5
Farshad Darvishi, Amin Zarei, Catherine Madzak
Signal peptide (SP) is an important factor and biobrick in the production and secretion of recombinant proteins. The aim of this study was in silico and in vivo analysis of SPs effect on the production of recombinant glucose oxidase (GOX) in Yarrowia lipolytica. Several in silico softwares, namely SignalP4, Signal-CF, Phobius, WolfPsort 0.2, SOLpro and ProtParam, were used to analyse the potential of 15 endogenous and exogenous SPs for the secretion of recombinant GOX in Y. lipolytica. According to in silico results, the SP of GOX was predicted as suitable in terms of high secretory potential and of protein solubility and stability which is chosen for in vivo analysis...
August 6, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30083836/isolation-and-characterization-of-chromium-vi-reducing-bacteria-from-tannery-effluents-and-solid-wastes
#6
Mohammad Mahbub Kabir, Abu Naieum Muhammad Fakhruddin, Muhammed Alamgir Zaman Chowdhury, Md Kamruzzaman Pramanik, Zeenath Fardous
In the present investigation, five novel Cr(VI) reducing bacteria were isolated from tannery effluents and solid wastes and identified as Kosakonia cowanii MKPF2, Klebsiella pneumonia MKPF5, Acinetobacter gerneri MKPF7, Klebsiella variicola MKPF8 and Serratia marcescens MKPF12 by 16S rDNA gene sequence analysis. The maximum tolerance concentration of Cr(VI) as K2 Cr2 O7 of the bacterial isolates was varying up to 2000 mg/L. Among the investigated bacterial isolates, A. gerneri MKPF7 was best in terms of reduction rate...
August 6, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30083778/diversity-and-characterization-of-cultivable-oleaginous-yeasts-isolated-from-mangrove-forests
#7
Sineenath Kunthiphun, Puthita Chokreansukchai, Patcharaporn Hondee, Somboon Tanasupawat, Ancharida Savarajara
A total of 198 yeasts were isolated from 140 samples collected from 7 mangrove forests in 4 provinces of Thailand, and were found to belong to 30 genera, 45 described species and at least 12 undescribed species based on their 26S rRNA (D1/D2 domain) gene sequence. The most prevalent species was Candida tropicalis, followed by Candida pseudolambica and Rhodosporidium paludigena. Lipid accumulation, as determined by Nile red staining, of the isolated yeasts revealed that 69 and 18 strains were positive and strongly positive, respectively, while quantitative analysis of the intracellular lipid accumulated in the latter indicated that 10 of these strains, Pseudozyma tsukubaensis (YWT7-2 and YWT7-3), Rhodotorula sphaerocarpa (YWW6-1 and SFL14-1SF), Saitozyma podzolica (YWT1-1, NS3-3 and NS10-2), Prototheca zopfii var...
August 6, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30054757/heterologous-production-of-resveratrol-in-bacterial-hosts-current-status-and-perspectives
#8
REVIEW
A Braga, P Ferreira, J Oliveira, I Rocha, N Faria
The polyphenol resveratrol (3,5,4'-trihydroxystilbene) is a well-known plant secondary metabolite, commonly used as a medical ingredient and a nutritional supplement. Due to its health-promoting properties, the demand for resveratrol is expected to continue growing. This stilbene can be found in different plants, including grapes, berries (blackberries, blueberries and raspberries), peanuts and their derived food products, such as wine and juice. The commercially available resveratrol is usually extracted from plants, however this procedure has several drawbacks such as low concentration of the product of interest, seasonal variation, risk of plant diseases and product stability...
July 27, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30054735/characterization-of-a-novel-cold-active-xylanase-from-luteimonas-species
#9
Zhenggang Han, Fang Shang-Guan, Jiangke Yang
Biotechnological application of xylanolytic enzymes is normally hindered by their temperature-dependent catalytic property. To satisfy the industrial demands, xylanases that can perform catalysis under cold condition are attracting attention. In this study, the biochemical properties of a predicted xylanase (laXynA) encoded in the genome of marine bacterium Luteimonas abyssi XH031T were characterized. Structure modeling and structure-based sequence alignment indicated that laXynA belongs to the glycoside hydrolase family 10, and it is 20-26% identical to other characterized cold-active xylanases in the same family...
July 27, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30039311/genome-shuffling-and-high-throughput-screening-of-brevibacterium-flavum-mdv1-for-enhanced-l-valine-production
#10
Qin-Geng Huang, Bang-Ding Zeng, Ling Liang, Song-Gang Wu, Jian-Zhong Huang
L-valine is an essential branched-amino acid that is widely used in multiple areas such as pharmaceuticals and special dietary products and its use is increasing. As the world market for L-valine grows rapidly, there is an increasing interest to develop an efficient L-valine-producing strain. In this study, a simple, sensitive, efficient, and consistent screening procedure termed 96 well plate-PC-HPLC (96-PH) was developed for the rapid identification of high-yield L-valine strains to replace the traditional L-valine assay...
July 23, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30022302/environmental-proteomic-studies-closer-step-to-understand-bacterial-biofilms
#11
REVIEW
Anupama Rani, Subramanian Babu
Advancement in proteome analytical techniques and the development of protein databases have been helping to understand the physiology and subtle molecular mechanisms behind biofilm formation in bacteria. This review is to highlight how the evolving proteomic approaches have revealed fundamental molecular processes underlying the formation and regulation of bacterial biofilms. Based on the survey of research reports available on differential expression of proteins in biofilms of bacterial from wide range of environments, four important cellular processes viz...
July 18, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30014433/industrial-wastewater-treatment-in-internal-circulation-bioreactor-followed-by-wetlands-containing-emergent-plants-and-algae
#12
Faiza Gulzar, Qaisar Mahmood, Zulfiqar Ahmad Bhatti, Bibi Saima Zeb, Shahida Shaheen, Tahir Hayat, Naeem Shahid, Tahseen Zeb
Wastewater treatment based on ecological principles is a low cost and highly desirable solution for the developing countries like Pakistan. The present study evaluated the effectiveness of biological treatment systems including Internal Circulation (IC) anaerobic bioreactor and constructed wetlands (CWs) containing macrophytes and mixed algal cultures for industrial wastewater treatment. The IC bioreactor reduced COD (52%), turbidity (89%), EC (24%) of the industrial wastewater. However, the effluents of IC bioreactor did not comply with National Environmental Quality Standards (NEQS) of Pakistan...
July 16, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30008019/antibacterial-evaluation-of-silver-nanoparticles-synthesized-from-lychee-peel-individual-versus-antibiotic-conjugated-effects
#13
Shaghufta Perveen, Naila Safdar, Gul-E-Saba Chaudhry, Azra Yasmin
This paper describes the extracellular synthesis of silver nanoparticles from waste part of lychee fruit (peel) and their conjugation with selected antibiotics (amoxicillin, cefixim, and streptomycin). FTIR studies revealed the reduction of metallic silver and stabilization of silver nanoparticles and their conjugates due to the presence of CO (carboxyl), OH (hydroxyl) and CH (alkanes) groups. The size of conjugated nanoparticles varied ranging from 3 to 10 nm as shown by XRD. TEM image revealed the spherical shape of biosynthesized silver nanoparticles...
July 14, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30003464/molecular-characterization-of-bmyc-gene-of-the-mosquito-pupicidal-bacteria-bacillus-amyloliquefaciens-vcrc-b483-and-in-silico-analysis-of-bacillomycin-d-synthetase-c-protein
#14
Mathivanan Ashokkumar, Geetha Irudayaraj, Nandakumar Yellapu, Arulsamy Mary Manonmani
A strain of Bacillus amyloliquefaciens (VCRC B483) exhibiting mosquito pupicidal, keratinase and antimicrobial activities was isolated from mangrove forest ecosystem of Andaman and Nicobar Islands. Molecular characterization of the strain showed the presence of lipopeptide encoding bmyC gene. Phylogenetic tree based on protein sequence of this gene exhibited homology with mycosubtilin synthetase of Bacilus atropheus and Iturin synthetase of Bacillus subtilis and B. amyloliquefaciens. This is the first report on the evolutionary conservation of amino acids concerned with the function and structure of bmyC protein of B...
July 12, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/30003364/recent-insights-into-the-microbial-catabolism-of-aryloxyphenoxy-propionate-herbicides-microbial-resources-metabolic-pathways-and-catabolic-enzymes
#15
REVIEW
Jie Zhou, Kuan Liu, Fengxue Xin, Jiangfeng Ma, Ning Xu, Wenming Zhang, Yan Fang, Min Jiang, Weiliang Dong
Aryloxyphenoxy-propionate herbicides (AOPPs) are widely used to control annual and perennial grasses in broadleaf crop fields and are frequently detected as contaminants in the environment. Due to the serious environmental toxicity of AOPPs, there is considerable concern regarding their biodegradation and environmental behaviors. Microbial catabolism is considered as the most effective method for the degradation of AOPPs in the environment. This review presents an overview of the recent findings on the microbial catabolism of various AOPPs, including fluazifop-P-butyl, cyhalofop-butyl, diclofop-methyl, fenoxaprop-P-ethyl, metamifop, haloxyfop-P-methyl and quizalofop-P-ethyl...
July 12, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/29998388/examination-of-novel-aureobasidium-pullulans-isolates-dominating-apple-microflora-and-assessing-their-potential-for-apple-juice-spoilage
#16
Łukasz Wajda, Magdalena Wyderka, Zuzanna Polak, Aleksandra Duda-Chodak, Małgorzata Makarewicz
There is very little up to date information regarding apple microflora so in the current study we decided to address that issue and assess whether dominant fungi which reside in fruit might spoil apple juice. Microorganisms were isolated from apples of Koksa Górska harvested in the middle of October in 2016 and 2017. Identification of isolates was based on the sequencing of ribosomal DNA. Some isolates were characteristic for a particular year but in both years apple microflora was dominated by Aureobasidium pullulans...
July 11, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/29992446/rhodococcus-bacteria-as-a-promising-source-of-oils-from-olive-mill-wastes
#17
O Marisa Herrero, María S Villalba, Mariana P Lanfranconi, Héctor M Alvarez
The accumulation of triacylglycerols (TAG) is a common feature among actinobacteria belonging to Rhodococcus genus. Some rhodococcal species are able to produce significant amounts of those lipids from different single substrates, such as glucose, gluconate or hexadecane. In this study we analyzed the ability of different species to produce lipids from olive oil mill wastes (OMW), and the possibility to enhance lipid production by genetic engineering. OMW base medium prepared from alperujo, which exhibited high values of chemical oxygen demand (127,000 mg/l) and C/N ratio (508), supported good growth and TAG production by some rhodococci...
July 10, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/29987404/a-2-year-field-trial-reveals-no-significant-effects-of-gm-high-methionine-soybean-on-the-rhizosphere-bacterial-communities
#18
Jingang Liang, Yue Jiao, Ying Luan, Shi Sun, Cunxiang Wu, Haiying Wu, Mingrong Zhang, Haifeng Zhang, Xiaobo Zheng, Zhengguang Zhang
Genetically modified (GM) crops have brought various economic benefits but may also have adversely affected soil microorganisms. To examine whether transgenic high-methionine soybean ZD91 alters the bacterial community structure in the rhizosphere, we performed a 2-year follow-up study using the transgenic high-methionine soybean cultivar ZD91 and wild type cultivar ZD. The community composition and the relative abundance of bacteria in rhizosphere soil were determined by sequencing of the 16S rRNA amplicon...
July 9, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/29980864/determination-and-quantification-of-asiaticoside-in-endophytic-fungus-from-centella-asiatica-l-urban
#19
Shubhpriya Gupta, Pankaj Bhatt, Preeti Chaturvedi
Centella asiatica (L.) Urban is a highly considered medicinal plant owing to its secondary metabolites asiaticoside, madecassoside, asiatic acid, and madecassic acid. The asiaticoside, one of the most important constituents of the plant, is a triterpenoid saponin having memory enhancement property. Given its medicinal properties, we isolated and characterized endophytic fungi from this plant with the aim to screen these microorganisms for asiaticoside production. In total, we isolated 13 endophytic fungi from the leaves of the plant, out of which one of the isolates produced asiaticoside...
July 6, 2018: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/29980862/biodegradation-of-chlorpropham-and-its-major-products-by-bacillus-licheniformis-nkc-1
#20
Namadev K Pujar, H G Premakshi, Shruti Laad, Shridhar V Pattar, Manisha Mirjankar, Chandrappa M Kamanavalli
Chlorpropham [isopropyl N-(3-chlorophenyl) carbamate] (CIPC), an important phenyl carbamate herbicide, has been used as a plant growth regulator and potato sprout suppressant (Solanum tuberosum L) during long-term storage. A bacterium capable of utilizing the residual herbicide CIPC as a sole source of carbon and energy was isolated from herbicide-contaminated soil samples employing selective enrichment method. The isolated bacterial strain was identified as Bacillus licheniformis NKC-1 on the basis of its morphological, cultural, biochemical characteristics and also by phylogenetic analysis based on 16S rRNA gene sequences...
July 6, 2018: World Journal of Microbiology & Biotechnology
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