journal
MENU ▼
Read by QxMD icon Read
search

Yeast

journal
https://www.readbyqxmd.com/read/30375036/a-fast-and-tuneable-auxin-inducible-degron-for-depletion-of-target-proteins-in-budding-yeast
#1
Gonzalo I Mendoza-Ochoa, J David Barrass, Barbara R Terlouw, Isabella E Maudlin, Susana de Lucas, Emanuela Sani, Vahid Aslanzadeh, Jane A E Reid, Jean D Beggs
The auxin-inducible degron (AID) is a useful technique to rapidly deplete proteins of interest in non-plant eukaryotes. Depletion is achieved by addition of the plant hormone auxin to the cell culture, which allows the auxin-binding receptor, TIR1, to target the AID-tagged protein for degradation by the proteasome. Fast depletion of the target protein requires good expression of TIR1 protein but, as we show here, high levels of TIR1 may cause uncontrolled depletion of the target protein in the absence of auxin...
October 29, 2018: Yeast
https://www.readbyqxmd.com/read/30350382/simulated-microgravity-triggers-characteristic-morphology-and-stress-response-in-saccharomyces-cerevisiae
#2
Shota Nemoto, Shinsuke Ohnuki, Fumiyoshi Abe, Yoshikazu Ohya
Reduction of gravity results in changes in gene expression and morphology in the budding yeast Saccharomyces cerevisiae. We studied the genes responsible for the morphological changes induced by simulated microgravity (SMG) using the yeast morphology data. We comprehensively captured the features of the morphological changes in yeast cells cultured in SMG with CalMorph, a high-throughput image processing system. Statistical analysis revealed that 95 of 501 morphological traits were significantly affected, which included changes in bud direction, the ratio of daughter to mother cell size, the random daughter cell shape, the large mother cell size, bright nuclei in the M phase, and the decrease in angle between two nuclei...
October 22, 2018: Yeast
https://www.readbyqxmd.com/read/30346046/dhh1-is-a-member-of-the-sesa-network
#3
Bengü Ergüden
The correct separation of chromosomes during mitosis is necessary to prevent genetic instability and aneuploidy, which are responsible for cancer and other diseases, and it depends on proper centrosome duplication. In a recent study, we found that Smy2 can suppress the essential role of Mps2 in the insertion of yeast centrosome into the nuclear membrane by interacting with Eap1, Scp160, and Asc1, and designated this network as SESA (Smy2, Eap1, Scp160, Asc1). Detailed analysis showed that the SESA network is part of a mechanism which regulates translation of POM34 mRNA...
October 22, 2018: Yeast
https://www.readbyqxmd.com/read/30335186/torc1-signalling-is-down-regulated-in-saccharomyces-cerevisiae-hsp30%C3%AE-cells-by-snf1-dependent-mechanisms
#4
Ajeet Singh, Daipayan Chowdhury, Avinash Gupta, Ramesh Chand Meena, Amitabha Chakrabarti
Hsp30 is a plasma membrane localized heat shock protein in Saccharomyces cerevisiae whose expression is induced by numerous environmental stressors. Elucidation of its mechanism of action has remained elusive primarily because hsp30Δ cells do not show a strong phenotype. To identify cellular functions associated with Hsp30 we thus compared the transcriptome of BY4741hsp30Δ with that of its wild type counterpart. Our studies indicate down-regulation of the Target of Rapamycin Complex 1 (TORC1) dependent gene-expression programme in hsp30Δ cells...
October 18, 2018: Yeast
https://www.readbyqxmd.com/read/30278108/the-phenomenon-of-lipid-metabolism-cut-mutants
#5
Róbert Zach, Martin Převorovský
Every cell cycle iteration culminates with the resolution of a mitotic nucleus into a pair of daughter nuclei, which are distributed between the two daughter cells. In the fission yeast Schizosaccharomyces pombe, the faithful division of a mitotic nucleus depends on unperturbed lipogenesis. Upon genetically or chemically induced perturbation of lipid anabolism, S. pombe cells fail to separate the two daughter nuclei and subsequently initiate lethal cytokinesis resulting in the so-called "cut" terminal phenotype...
October 2, 2018: Yeast
https://www.readbyqxmd.com/read/30264407/an-analysis-of-codon-bias-in-six-red-yeast-species
#6
Salvatore Camiolo, Merje Toome-Heller, M Catherine Aime, Sajeet Haridas, Igor V Grigoriev, Andrea Porceddu, Ilaria Mannazzu
Red yeasts, primarily species of Rhodotorula, Sporobolomyces, and other genera of Pucciniomycotina, are traditionally considered proficient systems for lipid and terpene production, and only recently have also gained consideration for the production of a wider range of molecules of biotechnological potential. Improvements of transgene delivery protocols and regulated gene expression systems have been proposed, but a dearth of information on compositional and/or structural features of genes has prevented transgene sequence optimization efforts for high expression levels...
September 27, 2018: Yeast
https://www.readbyqxmd.com/read/30221387/laboratory-evolution-and-physiological-analysis-of-saccharomyces-cerevisiae-strains-dependent-on-sucrose-uptake-via-the-phaseolus-vulgaris-suf1-transporter
#7
Wesley Leoricy Marques, Lara Ninon van der Woude, Marijke A H Luttik, Marcel van den Broek, Janine Margriet Nijenhuis, Jack T Pronk, Antonius J A van Maris, Robert Mans, Andreas K Gombert
Knowledge on the genetic factors important for the efficient expression of plant transporters in yeast is still very limited. Phaseolus vulgaris sucrose facilitator 1 (PvSuf1), a presumable uniporter, was an essential component in a previously published strategy aimed at increasing ATP yield in S. cerevisiae (Marques et al., 2018). However, attempts to construct yeast strains in which sucrose metabolism was dependent on PvSUF1 led to slow sucrose uptake. Here, PvSUF1-dependent S. cerevisiae strains were evolved for faster growth...
September 16, 2018: Yeast
https://www.readbyqxmd.com/read/30194700/unveiling-the-transcriptional-control-of-pleiotropic-drug-resistance-in-saccharomyces-cerevisiae-contributions-of-andr%C3%A3-goffeau-and-his-group
#8
Elisabetta Balzi, W Scott Moye-Rowley
Studies in the yeast Saccharomyces cerevisiae have provided much of the basic detail underlying the organization and regulation of multiple or pleiotropic drug resistance gene network in eukaryotic microbes. As with many aspects of yeast biology, the initial observations that drove the eventual molecular characterization of multidrug resistance gene were provided by genetics. This review focuses on contributions from the laboratory of Dr. André Goffeau that uncovered key aspects of the transcriptional regulation of these multidrug resistance genes...
September 7, 2018: Yeast
https://www.readbyqxmd.com/read/30193006/monovalent-cation-transporters-at-the-plasma-membrane-in-yeasts
#9
Joaquín Ariño, José Ramos, Hana Sychrova
Maintenance of proper intracellular concentrations of monovalent cations, mainly sodium and potassium, is a requirement for survival of any cell. In the budding yeast Saccharomyces cerevisiae, monovalent cation homeostasis is determined by the active extrusion of protons through the Pma1 H+ -ATPase (reviewed in another chapter of this issue), the influx and efflux of these cations through the plasma membrane transporters (reviewed in this chapter), and the sequestration of toxic cations into the vacuoles. Here, we will describe the structure, function, and regulation of the plasma membrane transporters Trk1, Trk2, Tok1, Nha1, and Ena1, which play a key role in maintaining physiological intracellular concentrations of Na+ , K+ , and H+ , both under normal growth conditions and in response to stress...
September 7, 2018: Yeast
https://www.readbyqxmd.com/read/30192990/all-about-cdr-transporters-past-present-and-future
#10
Rajendra Prasad, Elisabetta Balzi, Atanu Banerjee, Nitesh Kumar Khandelwal
Drug resistance mechanisms in human pathogenic Candida species are continually evolving. Over the time, Candida species have acquired diverse strategies to vanquish the effects of various classes of drugs thereby, emanating as a serious life threat. Apart from the repertoire of well-established strategies, which predominantly comprise alteration, overexpression of drug targets, and chromosome duplication, Candida species have evolved a number of permeability constraints for antifungal drugs, via compromised drug import or increased drug efflux...
September 7, 2018: Yeast
https://www.readbyqxmd.com/read/30175530/phosphatidate-phosphatase-activity-is-induced-during-lipogenesis-in-the-oleaginous-yeast-yarrowia-lipolytica
#11
Derell Hardman, Rahul Ukey, Stylianos Fakas
Phosphatidate (PA) phosphatase dephosphorylates the membrane phospholipid PA to diacylglycerol (DAG) that can be used for the synthesis of the storage lipid triacylglycerol (TAG). In Yarrowia lipolytica, TAG biosynthesis is induced during the lipogenic phase, which results in the accumulation of this lipid in cells. The accumulation of TAG during lipogenesis requires the supply of DAG, but the source of this DAG is not known in Y. lipolytica. In this study, the regulation of PA phosphatase during lipogenesis and its contribution to TAG biosynthesis was examined in Y...
September 3, 2018: Yeast
https://www.readbyqxmd.com/read/30141215/identifying-novel-genetic-determinants-for-oxidative-stress-tolerance-in-candida-glabrata-via-adaptive-laboratory-evolution
#12
Mian Huang, Katy C Kao
Candida glabrata (C glabrata) is an important yeast of industrial and medical significance. Resistance to oxidative stress is an important trait affecting its robustness as a production host or virulence as a pathogenic agent, but current understanding of resistance mechanisms is still limited in this fungus. In this study, we rapidly evolved C glabrata population to adapt to oxidative challenge (from 80mM to 350mM of H2 O2 ) through short-term adaptive laboratory evolution. Adaptive mutants were isolated from evolved populations and subjected to phenotypic and omics analyses to identify potential mechanisms of tolerance to H2 O2 ...
August 23, 2018: Yeast
https://www.readbyqxmd.com/read/30006941/first-aspects-on-acetate-metabolism-in-the-yeast-dekkera-bruxellensis-a-few-keys-for-improving-ethanol-fermentation
#13
Gilberto Henrique Teles, Jackeline Maria da Silva, Allyson Andrade Mendonça, Marcos Antonio de Morais Junior, Will de Barros Pita
Dekkera bruxellensis is continuously changing its status in fermentation processes, ranging from a contaminant or spoiling yeast to a microorganism with potential to produce metabolites of biotechnological interest. In spite of that, several major aspects of its physiology are still poorly understood. As an acetogenic yeast, minimal oxygen concentrations are able to drive glucose assimilation to oxidative metabolism, in order to produce biomass and acetate, with consequent low yield in ethanol. In the present study, we used disulfiram to inhibit acetaldehyde dehydrogenase activity to evaluate the influence of cytosolic acetate on cell metabolism...
October 2018: Yeast
https://www.readbyqxmd.com/read/29851426/overexpressed-maltose-transporters-in-laboratory-and-lager-yeasts-localization-and-competition-with-endogenous-transporters
#14
Virve Vidgren, John Londesborough
Plain and fluorescently tagged versions of Agt1, Mtt1 and Malx1 maltose transporters were overexpressed in two laboratory yeasts and one lager yeast. The plain and tagged versions of each transporter supported similar transport activities, indicating that they are similarly trafficked and have similar catalytic activities. When they were expressed under the control of the strong constitutive PGK1 promoter only minor proportions of the fluorescent transporters were associated with the plasma membrane, the rest being found in intracellular structures...
October 2018: Yeast
https://www.readbyqxmd.com/read/29752875/characterization-of-antagonistic-yeasts-for-biocontrol-applications-on-apples-or-in-soil-by-quantitative-analyses-of-synthetic-yeast-communities
#15
Simon Gross, Liesa Kunz, Denise C Müller, Amanda Santos Kron, Florian M Freimoser
Antagonistic yeasts suppress plant pathogenic fungi by various mechanisms, but their biocontrol efficacy also depends on the ability to compete and persist in the environment. The goal of the work presented here was to quantify the composition of synthetic yeast communities in order to determine the competitiveness of different species and identify promising candidates for plant protection. For this purpose, colony counting of distinct species and matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS; MALDI biotyping) were used to distinguish different yeast species and to quantify the composition of a synthetic community of six yeasts (Aureobasidium pullulans, Candida subhashii, Cyberlindnera sargentensis, Hanseniaspora sp...
October 2018: Yeast
https://www.readbyqxmd.com/read/29738624/saccharomyces-cerevisiae-mus81-mms4-and-rad52-can-cooperate-in-the-resolution-of-recombination-intermediates
#16
Huong Thi Thu Phung, Hoa Luong Hieu Nguyen, Sang Thanh Vo, Dung Hoang Nguyen, Minh Van Le
Mus81 is a well-conserved DNA structure-specific endonuclease which belongs to the XPF/Rad1 family of proteins that are involved in DNA nucleotide excision repair. Mus81 forms a heterodimer with a non-catalytic subunit, Mms4, in Saccharomyces cerevisiae (Eme1/EME1 in Schizosaccharomyces pombe and mammals). Recent evidence shows that Mus81 functions redundantly with Sgs1, a member of the ubiquitous RecQ family of DNA helicases, to process toxic recombinant intermediates. In budding yeast, homologous recombination is regulated by the Rad52 epistasis group of proteins, including Rad52, which stimulates the main steps of DNA sequence-homology searching...
September 2018: Yeast
https://www.readbyqxmd.com/read/29727488/induced-expression-of-the-alcohol-acetyltransferase-gene-atf1-in-industrial-yeast-saccharomyces-pastorianus-tum-34-70
#17
S Fischer, K R Büchner, T Becker
Targeted induced gene expression for industrial fermentation processes in food and beverage production could fulfill future demands. To avoid metabolic burden and disturbances owing to the fermentation procedure, induced gene expression is necessary for combating stress, such as that caused by temperature shifts that occur during the transition from fermentation to maturation in the brewing process. The aim of this study was to target gene expression in industrial yeast using stress-responsive promoters and homologues of the selection marker SMR1...
September 2018: Yeast
https://www.readbyqxmd.com/read/29709079/expression-of-unique-chimeric-human-papilloma-virus-type-16-hpv-16-l1-l2-proteins-in-pichia-pastoris-and-hansenula-polymorpha
#18
Helba Bredell, Jacques J Smith, Johann F Görgens, Willem H van Zyl
Cervical cancer is ranked the fourth most common cancer in women worldwide. Despite two prophylactic vaccines being commercially available, they are unaffordable for most women in developing countries. We compared the optimized expression of monomers of the unique HPV type 16 L1-L2 chimeric protein (SAF) in two yeast strains of Pichia pastoris, KM71 (Muts ) and GS115 (Mut+ ), with Hansenula polymorpha NCYC 495 to determine the preferred host in bioreactors. SAF was uniquely created by replacing the h4 helix of the HPV-16 capsid L1 protein with an L2 peptide...
September 2018: Yeast
https://www.readbyqxmd.com/read/30094872/indirect-monitoring-of-torc1-signalling-pathway-reveals-molecular-diversity-among-different-yeast-strains
#19
Eduardo I Kessi-Pérez, Francisco Salinas, Jennifer Molinet, Asier González, Sara Muñiz, José M Guillamón, Michael N Hall, Luis F Larrondo, Claudio Martínez
Saccharomyces cerevisiae is the main species responsible for the alcoholic fermentation in wine production. One of the main problems in this process is the deficiency of nitrogen sources in the grape must, which can lead to stuck or sluggish fermentations. Currently, yeast nitrogen consumption and metabolism are under active inquiry, with emphasis on the study of the TORC1 signalling pathway, given its central role responding to nitrogen availability and influencing growth and cell metabolism. However, the mechanism by which different nitrogen sources activates TORC1 is not completely understood...
August 9, 2018: Yeast
https://www.readbyqxmd.com/read/30070036/bakery-yeasts-a-new-model-for-studies-in-ecology-and-evolution
#20
Belén Carbonetto, Johan Ramsayer, Thibault Nidelet, Judith Legrand, Delphine Sicard
Yeasts have been involved in bread making since ancient times and have thus played an important role in the history and nutrition of humans. Bakery-associated yeasts have only recently attracted the attention of researchers outside of the bread industry. More than 30 yeast species are involved in bread making, and significant progress has been achieved in describing these species. Here, we present a review of bread-making processes and history, and we describe the diversity of yeast species and the genetic diversity of Saccharomyces cerevisiae isolated from bakeries...
August 1, 2018: Yeast
journal
journal
29300
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"