journal
MENU ▼
Read by QxMD icon Read
search

Journal of Basic Microbiology

journal
https://www.readbyqxmd.com/read/28429489/transcriptional-analysis-of-the-adaptation-of-ustilago-maydis-during-growth-under-nitrogen-fixation-conditions
#1
José Alejandro Sánchez-Arreguin, Miguel Angel Hernandez-Oñate, Claudia Geraldine León-Ramirez, José Ruiz-Herrera
Regulation of genes involved in nitrogen metabolism likely plays a role in the ability of fungi to exploit and survive under different environmental situations. To learn about the mechanism of adaptation of the biotrophic fungus Ustilago maydis from a medium containing a source of fixed nitrogen, to a medium depending on the ability to fix N2 by its bacterial endosymbiont, we explored gene expression profiles using RNA-Seq analyses under these two conditions. The differentially expressed (DE) fungal genes were analyzed, identifying 90 genes that were regulated 24 h after shifting the fungus to media lacking ammonium nitrate as a nitrogen source...
April 21, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28422446/fusion-of-a-family-20-carbohydrate-binding-module-cbm20-with-cyclodextrin-glycosyltransferase-of-geobacillus-sp-chb1-improves-catalytic-efficiency
#2
Xianbo Jia, Yonghua Guo, Xinjian Lin, Minsheng You, Chenqiang Lin, Longjun Chen, Jichen Chen
Cyclodextrin glycosyltransferase (CGTase) is an important industrial enzyme for production of cyclodextrins (CDs) from starch by intramolecular transglycosylation. CGTase consists of five domains labeled A to E. For optimizing catalytic activity of CGTase, CGTase of Geobacillus sp. was fused with the family 20 carbohydrate-binding module (CBM) of the Bacillus circulans strain 251 CGTase. The CBMbc251 that has a low binding free energy with maltohexaose, was selected by in silico design. Then the fusion enzyme, CGTΔE-CBMbc251, was constructed by fusing the CBMbc251 to the C-terminal region of CGTΔE...
April 19, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28418068/recombinant-overexpression-of-dihydroneopterin-aldolase-catalyst-potentially-regulates-folate-biofortification
#3
Dhananjay K Pandey, Atul Kumar, Jitendra S Rathore, Nagendra Singh, Bhupendra Chaudhary
We aim to investigate the prospects of increased production of folate through the overexpression of heterologous dihydroneopterin aldolase catalyst. The gene encoding aldolase catalyst was cloned into an expression vector and the induced recombinant protein was purified through metal-affinity chromatography which appeared at 14 kDa position on polyacrylamide-gel. Remarkably, a periodic increase in the extracellular and intracellular folic acid concentration was observed at 4 h growth of induced recombinant DHNA samples than control in a pH-dependent manner...
April 18, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28407285/spatial-variation-in-bacterial-community-in-natural-wetland-river-sea-ecosystems
#4
Hongxia Zhang, Shiling Zheng, Jiawang Ding, Oumei Wang, Fanghua Liu
Wetland-estuarine-marine environments are typical oxic/anoxic transition zones and have complex water flow-paths within the zone of mixing where freshwater interacts with ocean water. Little is known about the impact of this interaction on bacterial community structures or the relationship between bacterial community and geochemical factors in such transitional mixing environments. Hence, we investigated the distribution patterns and diversity in bacterial communities in the Yellow River estuary-coastal wetland-Bohai Sea transition zone by analyzing 39 samples from 13 ordered sites...
April 13, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28407275/agriculturally-important-microbial-biofilms-present-status-and-future-prospects
#5
REVIEW
Kulandaivelu Velmourougane, Radha Prasanna, Anil Kumar Saxena
Microbial biofilms are a fascinating subject, due to their significant roles in the environment, industry, and health. Advances in biochemical and molecular techniques have helped in enhancing our understanding of biofilm structure and development. In the past, research on biofilms primarily focussed on health and industrial sectors; however, lately, biofilms in agriculture are gaining attention due to their immense potential in crop production, protection, and improvement. Biofilms play an important role in colonization of surfaces - soil, roots, or shoots of plants and enable proliferation in the desired niche, besides enhancing soil fertility...
April 13, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28397264/population-densities-of-indigenous-acidobacteria-change-in-the-presence-of-plant-growth-promoting-rhizobacteria-pgpr-in-rhizosphere
#6
Sadaf Kalam, Subha Narayan Das, Anirban Basu, Appa Rao Podile
Rhizosphere microbial community has diverse metabolic capabilities and plays a crucial role in maintaining plant health. Oligotrophic plant growth promoting rhizobacteria (PGPR), along with difficult-to-culture microbial fractions, might be involved synergistically in microbe-microbe and plant-microbe interactions in the rhizosphere. Among the difficult-to-culture microbial fractions, Acidobacteria constitutes the most dominant phylum thriving in rhizospheric soils. We selected effective PGPR for tomato and black gram and studied their effect on population densities of acidobacterial members...
April 11, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28397262/extended-spectrum-%C3%AE-lactamase-producing-escherichia-coli-and-klebsiella-pneumoniae-critical-tools-for-antibiotic-resistance-pattern
#7
REVIEW
Nagarajan Padmini, Antony Alex Kennedy Ajilda, Natesan Sivakumar, Gopal Selvakumar
Drug resistance is a phenomenon where by an organism becomes fully or partially resistant to drugs or antibiotics being used against it. Antibiotic resistance poses an exacting intimidation for people with underlying medical immune conditions or weakened immune systems. Infections caused by the enzyme extended spectrum β-lactamase (ESBL) producing multi drug resistance (MDR) Enterobacteriaceae especially Escherichia coli and Klebsiella pneumoniae are resistant to a broad range of beta lactams, including third generation cephalosporins...
April 11, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28387456/synonymous-codon-usage-of-genes-in-polymerase-complex-of-newcastle-disease-virus
#8
Chandra Shekhar Kumar, Sachin Kumar
Newcastle disease virus (NDV) is pathogenic to both avian and non-avian species but extensively finds poultry as its primary host and causes heavy economic losses in the poultry industry. In this study, a total of 186 polymerase complex comprising of nucleoprotein (N), phosphoprotein (P), and large polymerase (L) genes of NDV was analyzed for synonymous codon usage. The relative synonymous codon usage and effective number of codons (ENC) values were used to estimate codon usage variation in each gene. Correspondence analysis (COA) was used to study the major trend in codon usage variation...
April 7, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28375550/prospecting-fungal-parasites-of-the-potato-cyst-nematode-globodera-pallida-using-a-rapid-screening-technique
#9
Rinu Kooliyottil, Louise-Marie Dandurand, Guy R Knudsen
Seven filamentous fungal species were isolated from individual eggs of Globodera pallida cysts collected from infested fields in Shelley Idaho, USA and identified as Chaetomium globosum, Fusarium oxysporum, Fusarium solani, Fusarium tricinctum, Microdochium bolleyi, Purpureocillium lilacinum, and Plectosphaerella cucumerina. Their ability to reduce infection by G. pallida in planta were assessed in simple, reproducible micro-rhizosphere chambers (micro-ROCs). All fungi reduced G. pallida infection in potato, but greatest reduction was observed with C...
April 4, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28370251/metabolomics-analysis-of-fungal-biofilm-development-and-of-arachidonic-acid-based-quorum-sensing-mechanism
#10
Adam Ząbek, Adam Junka, Patrycja Szymczyk, Wojciech Wojtowicz, Magdalena Klimek-Ochab, Piotr Młynarz
The infections caused by filamentous fungi are becoming worldwide problem of healthcare systems due to increasing drug-resistance of this microorganism and increasing number of immunocompromised nosocomial patients. These infections are related with Aspergillus ability to form sessile communities referred to as the biofilms. The small compounds known as quorum sensing (QS) molecules allow this microorganism to coordinate all processes taking place during biofilm formation and maturation. In the study presented, the HRMAS (1) H NMR metabolomic approach was applied to define composition of extra and intracellular metabolites produced by biofilmic and planktonic (aka free-swimming) cultures of this microorganism and to evaluate impact of quorum sensing molecule, arachidonic acid (AA) on biofilm formation...
April 3, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28370185/strain-improvement-of-industrially-important-microorganisms-based-on-resistance-to-toxic-metabolites-and-abiotic-stress
#11
REVIEW
Jan Fiedurek, Mariusz Trytek, Janusz Szczodrak
Improvement of the biosynthetic capabilities of industrially relevant microbes to produce desired metabolites in higher quantities is one of the important topics of modern biotechnology. In this article, different strategies of improvement of mutated microbial strains are briefly described. This is followed by the first comprehensive review of the literature on obtaining high yielding microorganisms, that is, mutants exhibiting resistance to antimetabolites, nutritional repression, and abiotic stresses as well as tolerance to solvents and toxic substrates or products...
March 28, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28295433/structural-analysis-and-enhanced-production-of-fusaricidin-from-paenibacillus-kribbensis-cu01-isolated-from-yellow-loess
#12
Jaewon Ryu, Jong M Kim, Chul W Lee, Si W Kim
A bacterial strain showing strong antifungal activity was isolated from yellow loess and was identified as Paenibacillus kribbensis CU01. Insoluble mucoidal polymers were separated from M9 culture medium via low-speed centrifugation. Most antifungal activity was associated with substances in the insoluble precipitate, which was purified by reverse phase high performance liquid chromatography. Purified fractions were analyzed using matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry...
March 10, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28272809/bioprospection-of-cold-adapted-yeasts-with-biotechnological-potential-from-antarctica
#13
María Martha Martorell, Lucas Adolfo Mauro Ruberto, Pablo Marcelo Fernández, Lucía Inés Castellanos de Figueroa, Walter Patricio Mac Cormack
The aim of this study was to investigate the ability to produce extracellular hydrolytic enzymes at low temperature of yeasts isolated from 25 de Mayo island, Antarctica, and to identify those exhibiting one or more of the evaluated enzymatic activities. A total of 105 yeast isolates were obtained from different samples and 66 were identified. They belonged to 12 basidiomycetous and four ascomycetous genera. Most of the isolates were ascribed to the genera Cryptococcus, Mrakia, Cystobasidium, Rhodotorula, Gueomyces, Phenoliferia, Leucosporidium, and Pichia...
March 8, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28225559/effects-of-an-alternative-oxidase-gene-on-conidia-viability-under-external-stresses-in-monascus-ruber-m7
#14
Yanchun Shao, Qi Li, Youxiang Zhou, Fusheng Chen
Monascus species can produce natural edible pigments and many other bioactive metabolites. In this study, mraox gene (Monascus ruber alternative oxidase) was isolated, sequenced, and replaced in order to investigate the function in resistance of conidia to stressful conditions. The derived protein of the mraox gene consisted of 350 amino acids with a conserved ferritin-like diiron-binding domain at the C-terminus, sharing a high homolog with alternative oxidase proteins in other filamentous fungi. Deletion of mraox gene repressed the conidia germination rate (CGR) when conidia were exposed to H2 O2 , high temperature (40 and 50 °C) and alkerline buffer (pH8...
February 22, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28217898/metal-induced-changes-in-trivalent-chromium-resistant-alcaligenes-faecalis-vitsim2
#15
Shiny C Matilda, Chittibabu Shanthi
The changes induced in bacterial strains under stress conditions provide an insight into metal resistance strategies. Trivalent chromium resistant bacterium were isolated and identified by 16S rRNA gene sequencing and designated as Alcaligenes faecalis VITSIM2. The growth pattern was monitored. The organism also showed resistance to copper, cadmium, and certain antibiotics. The differentially expressed proteins in SDS PAGE were identified by mass spectrometry as flagellin and 50S ribosomal L36 protein. The morphological changes were identified by scanning electron microscopy...
February 20, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28217886/the-use-of-newly-isolated-streptomyces-strain-tn258-as-potential-biocontrol-agent-of-potato-tubers-leak-caused-by-pythium-ultimum
#16
Imen Sellem, Mohamed Ali Triki, Lobna Elleuch, Manel Cheffi, Ahlem Chakchouk, Slim Smaoui, Lotfi Mellouli
An actinomycete strain designated TN258, was isolated from Tunisian Sahara soil and selected for its antagonistic activity, especially against Pythium ultimum (P. ultimum) causing potato tubers leak. Based on the results of cultural characteristic of TN258 strain, the 16S rRNA gene nucleotide sequence (1433 bp, accession n° HE600071) and the phylogenetic analysis, we propose the assignment of our new isolate bacterium as Streptomyces TN258 strain. After culture optimization, the inhibitory effect of TN258 free cell supernatant against P...
February 20, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28211948/yield-and-cold-storage-of-trichoderma-conidia-is-influenced-by-substrate-ph-and-storage-temperature
#17
Johanna M Steyaert, Anastasia Chomic, Maria Nieto-Jacobo, Artemio Mendoza-Mendoza, Amanda J Hay, Mark Braithwaite, Alison Stewart
In this study we examined the influence of the ambient pH during morphogenesis on conidial yield of Trichoderma sp. "atroviride B" LU132 and T. hamatum LU593 and storage at low temperatures. The ambient pH of the growth media had a dramatic influence on the level of Trichoderma conidiation and this was dependent on the strain and growth media. On malt-extract agar, LU593 yield decreased with increasing pH (3-6), whereas yield increased with increasing pH for LU132. During solid substrate production the reverse was true for LU132 whereby yield decreased with increasing pH...
February 17, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28156000/rhamnolipids-from-pseudomonas-aeruginosa-strain-w10-as-antibiofilm-antibiofouling-products-for-metal-protection
#18
Alif Chebbi, Mohamed Elshikh, Farazul Haque, Syed Ahmed, Sara Dobbin, Roger Marchant, Sami Sayadi, Mohamed Chamkha, Ibrahim M Banat
Industrial biofouling-problems associated with the accumulation of microorganisms from flowing water and fluids on processing surfaces can cause severe problems. A Pseudomonas aeruginosa strain W10 was isolated from industrial setting and found to produce predominantly di-rhamnolipids (Rha-Rha-C10-C10) with a yield of around 10 g L(-1) and a critical micelle concentration (CMC) of 80 mg L(-1) . P. aeruginosa W10 rhamnolipids were able to disrupt up to 99% of 48 h pre-formed biofilms of the Gram-positive organisms Bacillus licheniformis CAN55, Staphylococcus capitis SH6, and a mixed culture (strains CAN55, SH6, and W10), under static conditions, at concentrations of 0...
February 3, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28272747/a-simple-rapid-and-sensitive-plate-assay-for-detection-of-microbial-hyaluronidase-activity
#19
Sandip Patil, Bhushan Chaudhari
Hyaluronidase (hyase) is a glycosidase enzyme that predominantly degrades hyaluronic acid (HA) having important applications in many biotechnological processes and therapeutics. Several assay methods have been proposed to screen hyase producing microorganisms; however, they rely on unique reagents and sophisticated instruments, which are expensive and could be unavailable in general laboratories. In the present studies, a rapid, simple, sensitive, highly reproducible, and cost-effective qualitative plate assay has been developed for the screening of hyase producing microorganisms...
April 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28156004/comparative-analysis-of-crispr-cas-systems-in-klebsiella-genomes
#20
COMPARATIVE STUDY
Juntao Shen, Li Lv, Xudong Wang, Zhilong Xiu, Guoqiang Chen
Prokaryotic CRISPR-Cas system provides adaptive immunity against invasive genetic elements. Bacteria of the genus Klebsiella are important nosocomial opportunistic pathogens. However, information of CRISPR-Cas system in Klebsiella remains largely unknown. Here, we analyzed the CRISPR-Cas systems of 68 complete genomes of Klebsiella representing four species. All the elements for CRISPR-Cas system (cas genes, repeats, leader sequences, and PAMs) were characterized. Besides the typical Type I-E and I-F CRISPR-Cas systems, a new Subtype I system located in the ABC transport system-glyoxalase region was found...
April 2017: Journal of Basic Microbiology
journal
journal
29022
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"