journal
MENU ▼
Read by QxMD icon Read
search

Journal of Biotechnology

journal
https://www.readbyqxmd.com/read/29787798/comprehensive-analysis-of-a-metabolic-model-for-lipid-production-in-rhodosporidium-toruloides
#1
María Teresita Castañeda, Sebastián Nuñez, Fabricio Garelli, Claudio Voget, Hernán De Battista
The yeast Rhodosporidium toruloides has been extensively studied for its application in biolipid production. The knowledge of its metabolism capabilities and the application of constraint-based flux analysis methodology provide useful information for process prediction and optimization. The accuracy of the resulting predictions is highly dependent on metabolic models. A metabolic reconstruction for R. toruloides metabolism has been recently published. On the basis of this model, we developed a curated version that unblocks the central nitrogen metabolism and, in addition, completes charge and mass balances in some reactions neglected in the former model...
May 19, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29763639/complete-genome-sequence-of-gordonia-sp-yc-jh1-a-bacterium-efficiently-degrading-a-wide-range-of-phthalic-acid-esters
#2
Shuanghu Fan, Junhuan Wang, Kang Li, Ting Yang, Yang Jia, Baisuo Zhao, Yanchun Yan
Phthalic acid esters (PAEs) are a family of recalcitrant pollutants mainly used as plasticizer. The strain Gordonia sp.YC-JH1, isolated from petroleum-contaminated soil, is capable of efficiently degrading a wide range of PAEs. In order to pertinently investigate the genetic mechanisms of PAEs catabolism by strain YC-JH1, its complete genome sequencing has been performed by SMRT sequencing technology. The genome comprises a circular chromosome and a plasmid with a size of 4,101,557 bp and 91,767 bp respectively...
May 12, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29753682/class-a-%C3%AE-lactamases-and-inhibitors-in-silico-analysis-of-the-binding-mode-and-the-relationship-with-resistance
#3
Rebeca Pereira, Vitor Won-Held Rabelo, Alexander Sibajev, Paula Alvarez Abreu, Helena Carla Castro
β-lactams are one of the most common antimicrobials used to treat bacterial infections. However, bacterial resistance has compromised their efficacy, mainly due to β-lactamase enzyme production. To overcome this resistance, β-lactamase inhibitors can be used in association with these antimicrobials. Herein, we analyzed the structural characteristics of β-lactamases and their interactions with classical inhibitors, such as clavulanic acid (CA), sulbactam (SB) and tazobactam (TZ) to gain insights into resistance...
May 10, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29746879/characterization-of-novel-heat-responsive-transcription-factor-tahsfa6e-gene-involved-in-regulation-of-heat-shock-proteins-hsps-a-key-member-of-heat-stress-tolerance-network-of-wheat
#4
Ranjeet R Kumar, Suneha Goswami, Khushboo Singh, Kavita Dubey, Gyanendra K Rai, Bhupinder Singh, Shivdhar Singh, Monendra Grover, Dwijesh Mishra, Sanjeev Kumar, Suman Bakshi, Anil Rai, Himanshu Pathak, Viswanathan Chinnusamy, Shelly Praveen
Heat stress has an adverse effect on the quality and quantity of agriculturally important crops, especially wheat. The tolerance mechanism has not been explored much in wheat and very few genes/ TFs responsive to heat stress is available on public domain. Here, we identified, cloned and characterized a putative TaHSFA6e TF gene of 1.3 kb from wheat cv. HD2985. We observed an ORF of 368 aa with Hsf DNA binding signature domain in the amino acid sequence. Single copy number of TaHSFA6e was observed integrated in the genome of wheat...
May 7, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29738785/characterization-of-the-phenylglycine-aminotransferase-pgle-from-streptomyces-pristinaespiralis
#5
Natalie Osipenkov, Andreas Kulik, Yvonne Mast
L-phenylglycine is a rare non-proteinogenic amino acid, which only occurs in a few natural compounds, such as the streptogramin antibiotics pristinamycin I and virginiamycin S or the bicyclic peptide antibiotic dityromycin. Here we report on the biochemical characterization of the aminotransferase PglE that catalyzes the transamination from phenylglyoxylate to L-phenylglycine, which represents the final reaction step during phenylglycine biosynthesis. Enzyme assays with the purified PglE enzyme revealed that L-phenylalanine is used as an amino group donor for the transamination reaction, leading to the formation of phenylpyruvate, which may re-enter phenylglycine biosynthesis as a precursor...
May 5, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29733878/multi-step-high-throughput-conjugation-platform-for-the-development-of-antibody-drug-conjugates
#6
Sebastian Andris, Michaela Wendeler, Xiangyang Wang, Jürgen Hubbuch
Antibody drug conjugates (ADCs) form a rapidly growing class of biopharmaceuticals which attracts a lot of attention throughout the industry due to its high potential for cancer therapy. They combine the specificity of a monoclonal antibody (mAb) and the cell-killing capacity of highly cytotoxic small molecule drugs. Site-specific conjugation approaches involve a multi-step process for covalent linkage of antibody and drug via a linker. Despite the range of parameters that have to be investigated, high-throughput methods are scarcely used so far in ADC development...
May 4, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29733877/detoxification-of-sugarcane-derived-hemicellulosic-hydrolysate-using-a-lactic-acid-producing-strain
#7
Regiane Alves de Oliveira, Carlos Eduardo Vaz Rossell, Joachim Venus, Sarita Cândida Rabelo, Rubens Maciel Filho
Furfural and HMF are known for a negative impact in different bioprocesses, including lactic acid fermentation. There are already some methods described to remove these inhibitory compounds from the hydrolysates. However, these methods also reduce the yield of sugars from the hydrolysis and increase the process costs. In this work, the detoxification of sugarcane-derived hemicellulosic hydrolysate was performed by Lactobacillus plantarum during the fermentation time. At the end of the fermentation, a decrease of 98 % of furfural and 86 % of HMF and was observed, with a final lactic acid titer of 34...
May 4, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29730317/isolation-and-characterization-of-a-halotolerant-and-protease-resistant-%C3%AE-galactosidase-from-the-gut-metagenome-of-hermetia-illucens
#8
Chang-Muk Lee, Su-Yeon Kim, Jaeeun Song, Young-Seok Lee, Joon-Soo Sim, Bum-Soo Hahn
Hermetia illucens is a voracious insect scavenger, decomposing food waste efficiently. To survey novel hydrolytic enzymes, we constructed a fosmid metagenome library using unculturable intestinal microorganisms from H. illucens in our previous study (Lee et al., 2014). Functional screening of the library on carboxymethyl cellulose plates identified a fosmid clone the product of which displayed hydrolytic activity. Sequence analysis of the fosmid revealed a novel α-galactosidase gene, Agas2. The Agas2 gene is composed of 2,007 base pairs encoding 668 amino acids with a deduced 25 amino acid N-terminal signal peptide sequence...
May 3, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29730316/preparation-of-a-novel-soluble-inducer-by-cellobiase-release-microcapsules-and-its-application-in-cellulase-production
#9
Ying Xia, Lirong Yang, Liming Xia
Effective and low-cost inducer is a prerequisite for efficiency improvement in cellulase production by Trichoderma reesei. In this study, spores of Aspergillus niger enriched with cellobiase were embedded in Ca-alginate microcapsules, attaining a sustained cellobiase-release system (named CRMA) which was then used to catalyze the conversion of glucose into glucose-sophorose sugar mixture via transglycosylation. Further, the process and optimal parameters of transglycosylation reaction were studied in a 5 L reactor and the sophorose concentration reached 70...
May 3, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29729310/multiple-functions-of-caprylic-acid-induced-impurity-precipitation-for-process-intensification-in-monoclonal-antibody-purification
#10
Anja Trapp, Alexander Faude, Natalie Hörold, Sven Schubert, Sabine Faust, Thilo Grob, Stefan Schmidt
New emerging technologies delivering benefits in terms of process robustness and economy are an inevitable prerequisite for monoclonal antibody purification processes intensification. Caprylic acid was proven as an effective precipitating agent enabling efficient precipitaton of product- and process-related impurities while leaving the antibody in solution. This purification step at mild acidic pH was therefore introduced in generic antibody platform approaches after Protein A capture and evaluated for its impact regarding process robustness and antibody stability...
May 2, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29723546/alginate-perlite-encapsulated-pseudomonas-putida-a-atcc-12633-cells-preparation-characterization-and-potential-use-as-plant-inoculants
#11
Andrés S Liffourrena, Gloria I Lucchesi
Microbial immobilization can be used to prepare encapsulated inoculants. Here, we characterize and describe the preparation of Ca-alginate-perlite microbeads loaded with cells of plant growth-promoting Pseudomonas putida A (ATCC 12633), for their future application as agricultural inoculants. The microbeads were prepared by dropwise addition of a CaCl2 -paraffin emulsion mixture to an emulsion containing alginate 2% (w/v), perlite 0.1-0.4% (w/v) and bacterial suspension in 0.9% NaCl (1010 CFU/mL). For all perlite concentrations used, microbead size was 90-120 µm, the trapped population was 108 CFU/g microbeads and the increase in mechanical stability was proportional to perlite concentration...
April 30, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29719200/proteomic-analysis-of-micro-scale-bioreactors-as-scale-down-model-for-a-mab-producing-cho-industrial-fed-batch-platform
#12
Vania Bertrand, Sebastian Vogg, Thomas K Villiger, Matthieu Stettler, Hervé Broly, Miroslav Soos, Massimo Morbidelli
The pharmaceutical production of recombinant proteins, such as monoclonal antibodies, is rather complex and requires proper development work. Accordingly, it is essential to develop appropriate scale-down models, which can mimic the corresponding production scale. In this work, we investigated the impact of the bioreactor scale on intracellular micro-heterogeneities of a CHO cell line producing monoclonal antibodies in fed-batch mode, using a 10 mL micro-bioreactor (ambr™) scale-down model and the corresponding 300 L pilot-scale bioreactor...
April 29, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29715488/advanced-multigene-expression-system-for-nannochloropsis-salina-using-2a-self-cleaving-peptides
#13
Hyun Gi Koh, Nam Kyu Kang, Eun Kyung Kim, Seungjib Jeon, Sung-Eun Shin, Bongsoo Lee, Yong Keun Chang
Even though there has been much interest in genetic engineering of microalgae, its progress has been slow due to the difficulty and limitation of available techniques. Currently, genetic modification in most microalgal strains is confined to single gene transformation. Here, a multigene expression system for the oleaginous model strain Nannochloropsis salina was developed with glycine-serine-glycine spacer linked 2A self-cleaving peptides (2A) for the first time. An efficiency test of the four most widely used 2As revealed that two different types of 2As T2A and E2A have the best performance in N...
April 28, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29715487/potent-insect-gut-binding-lectin-from-sclerotium-rolfsii-impart-resistance-to-sucking-and-chewing-type-insects-in-cotton
#14
Gulamnabi L Vanti, Ishwarappa S Katageri, Shashikala R Inamdar, Vamadevaiah Hiremathada, Bale M Swamy
Cotton is an important crop that is continuously cultivated around the world. However, its production has decreased in recent times due to wide ranging insects and also current practices of using synthetic insecticides that are not precise and their residues impairing the biodiversity. Hence, the search for newer classes of efficient entomotoxic proteins continues. Genetically modified cotton crops with cry genes from Bacillus thuringiensis, have been cultivated across the world, which overcome the chewing type insect menace...
April 28, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29704539/identification-of-pseudomonas-mosselii-bs011-gene-clusters-required-for-suppression-of-rice-blast-fungus-magnaporthe-oryzae
#15
Lijuan Wu, Wei Xiao, Guoqing Chen, Dawei Song, Maqsood Ahmed Khaskheli, Pei Li, Shiying Zhang, Guozhong Feng
Pseudomonas is a Gram-negative, rod-shaped bacteria. Many members of this genus displayed remarkable physiological and metabolic activity against different plant pathogens. However, Pseudomonas mosselii has not yet been characterized in biocontrol against plant disease. Here we isolated a strain of P. mosselii BS011 from the rhizosphere soil of rice plants, and the isolate showed strong inhibitory activity against the rice blast fungus Magnaporthe oryzae. Further we sequenced the complete genome of BS011, which consist of 5...
April 25, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29702132/complete-genome-sequence-of-bacillus-velezensis-qst713-a-biocontrol-agent-that-protects-agaricus-bisporus-crops-against-the-green-mould-disease
#16
Caroline Pandin, Dominique Le Coq, Julien Deschamps, Régis Védie, Thierry Rousseau, Stéphane Aymerich, Romain Briandet
Bacillus subtilis QST713 is extensively used as a biological control agent in agricultural fields including in the button mushroom culture, Agaricus bisporus. This last use exploits its inhibitory activity against microbial pathogens such as Trichoderma aggressivum f. europaeum, the main button mushroom green mould competitor. Here, we report the complete genome sequence of this bacterium with a genome size of 4 233 757 bp, 4263 predicted genes and an average GC content of 45.9%. Based on phylogenomic analyses, strain QST713 is finally designated as Bacillus velezensis...
April 24, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29689281/fabrication-of-engineered-tubular-tissue-for-small-blood-vessels-via-three-dimensional-cellular-assembly-and-organization-ex-vivo
#17
Taisuke Masuda, Mitsuhiro Ukiki, Yuka Yamagishi, Michiya Matsusaki, Mitsuru Akashi, Utako Yokoyama, Fumihito Arai
Although there is a great need for suitable vascular replacements in clinical practice, much progress needs to be made toward the development of a fully functional tissue-engineered construct. We propose a fabrication method of engineered tubular tissue for small blood vessels via a layer-by-layer cellular assembly technique using mouse smooth muscle cells, the construction of a poly-(L-lactide-co-ε-caprolactone) (PLCL) scaffold, and integration in a microfluidic perfusion culture system. The cylindrical PLCL scaffold is incised, expanded, and its surface is laminated with the cell layers...
April 21, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29684389/high-quality-forage-production-under-salinity-by-using-a-salt-tolerant-atnxh1-expressing-transgenic-alfalfa-combined-with-a-natural-stress-resistant-nitrogen-fixing-bacterium
#18
Margarita Stritzler, Pagano Elba, Carolina Berini, Cristina Gomez, Nicolás Ayub, Gabriela Soto
Alfalfa, usually known as the "Queen of Forages", is the main source of vegetable protein to meat and milk production systems worldwide. This legume is extremely rich in proteins due to its highly efficient symbiotic association with nitrogen-fixing strains. In the last years, alfalfa culture has been displaced to saline environments by other important crops, including major cereals, a fact that has reduced its biomass production and symbiotic nitrogen fixation. In this short communication, we report the high forage production and nutrient quality of alfalfa under saline conditions by alfalfa transformation with the AtNHX1 Na+ /H+ antiporter and inoculation with the stress-resistant nitrogen-fixing strain Sinorhizobium meliloti B401...
April 20, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29684388/sorbitol-production-and-optimization-of-photosynthetic-supply-in-the-cyanobacterium-synechocystis-pcc-6803
#19
Taejun Chin, Yukiko Okuda, Masahiko Ikeuchi
Biochemicals production is a major theme in the application of photosynthesis to address global warming and organic-resource problems. Among biochemicals, sugar alcohols have attracted research attention because they are directly derived from two photosynthetic products, sugars and reductants. Here, we produced sorbitol photosynthetically by using cyanobacteria and modified the supply of its substrates through genetic engineering. Expression of an NADPH-dependent enzyme that generates sorbitol-6-phosphate, S6PDH, was highly toxic to cyanobacteria likely due to the sorbitol production, whereas expression of an NADH-dependent enzyme, SrlD2, yielded no sorbitol...
April 20, 2018: Journal of Biotechnology
https://www.readbyqxmd.com/read/29679607/process-intensification-of-core-streptavidin-production-through-high-cell-density-cultivation-of-recombinant-e-coli-and-a-temperature-based-refolding-method
#20
Leong Huat Chua, Soo Choon Tan, Mervyn W O Liew
An intensified process was developed that enables high level production of recombinant core streptavidin (cSAV), a non-glycosylated tetrameric protein utilised in a wide range of applications. A pH-stat fed-batch feeding strategy was employed to achieve high-cell-density and improve volumetric yield of cSAV which was expressed as inclusion bodies (IBs). The effect of induction at different cell densities (OD 20, 60 and 100) on volumetric and specific yield were then studied. Highest volumetric yield of cSAV (1550 mg L-1 ) was obtained from induction at OD 100 without significant reductions in specific yield...
April 18, 2018: Journal of Biotechnology
journal
journal
28905
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"