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Electrophoresis

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https://www.readbyqxmd.com/read/28444931/study-of-structure-dependent-chromatographic-behavior-of-glycopeptides-using-reversed-phase-nanolc
#1
Petr Kozlik, Radoslav Goldman, Miloslav Sanda
Analysis of glycosylation is challenging due to micro- and macro-heterogeneity of the protein attachment. A combination of liquid chromatography with tandem mass spectrometry is one of the most powerful tools for glycopeptide analysis. In this work, we show the effect of various monosaccharide units on the retention time of glycopeptides. Retention behavior of several glycoforms of six peptides obtained from tryptic digest of haptoglobin, hemopexin and sex hormone binding globulin was studied on a reversed phase chromatographic column...
April 26, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28444798/multi-gel-casting-apparatus-for-vertical-polyacrylamide-gels-with-in-built-solution-flow-system-and-liquid-level-detectors
#2
Praveen Maurye, Arpita Basu, Tapas Kumar Bandyopadhyay, Jayanta Kumar Biswas, Bimal Prasana Mohanty
Polyacrylamide gel electrophoresis (PAGE) is the most widely used technique for the separation and biochemical analysis of biomolecules. The ever growing field of proteomics and genomics necessitates the analysis of many proteins and nucleic acid samples to understand further about the structure and function of cells. Simultaneous analysis of multiple protein samples often requires casting of many PAGE gels. Several variants of multi-gel casting/electrophoresis apparatuses are frequently used in research laboratories...
April 26, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28444765/interinstrumental-transfer-of-a-fast-short-end-injection-capillary-electrophoretic-method-application-to-the-separation-of-niobium-tantalum-and-their-substituted-ions
#3
Bart De Cock, James D Oliver, Nathalie Delaunay, Gauthier Deblonde, Debby Mangelings, Yvan Vander Heyden
The interinstrumental transfer of a short-end capillary electrophoretic method was studied. A model separation of the hexameric forms of Niobium, Tantalum and their substituted ions (Nb6-x Tax with 0≤x≤6) was selected as test case. The method was first optimised on a Beckman instrument and in a second step transferred to an Agilent instrument. The transfer needed updated guidelines that tackled differences in effective capillary length, 8.5 (Agilent) versus 10 cm (Beckman), because of instrumental different capillary cartridges...
April 26, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28440547/development-of-lc-qtof-ms-method-for-human-lung-tissue-fingerprinting-a-preliminary-application-to-non-small-cell-lung-cancer
#4
Michal Ciborowski, Joanna Kisluk, Karolina Pietrowska, Paulina Samczuk, Ewa Parfieniuk, Tomasz Kowalczyk, Miroslaw Kozlowski, Adam Kretowski, Jacek Niklinski
The major histologic subtypes of non-small cell lung cancer (NSCLC) include adenocarcinoma (ADC), squamous cell lung carcinoma (SCC), and large-cell carcinoma (LCC). Clinical trials of targeted agents and newer chemotherapy agents yielded differences in outcomes according to histologic subgroups providing a rationale for histology-based treatment in NSCLC. Currently NSCLC subtyping is performed based on histopathological examinations and immunohistochemistry. However available methods leave about 10% of NSCLC cases as not otherwise specified...
April 25, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28436069/the-eprep-system-a-new-electrophoretic-approach-for-dna-isolation-from-biological-samples
#5
Corinna Kueppers, Sabine Schlappa, Annette Bogdoll, Lothar Breitkopf, Nicole Seip, Thorsten Singer
We present a new free-flow electrophoretic separation system that extends the established concepts of nucleic acid migration in an electric field to a broadly applicable preparative scale. The system comprises a disposable flow tube in which the target nucleic acids are separated from impurities by a balanced combination of electrophoretic migration and counter-streaming electroosmotic flow under the influence of an applied external electric field. Despite the complex theoretical background the introduced electrophoretic technology offers simple hardware setup and handling protocols...
April 24, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28432793/single-and-dual-cyclodextrins-systems-for-the-enantiomeric-and-diastereoisomeric-separations-of-structurally-related-dihydropyridone-analogues
#6
Thibaut Delplanques, Rajaa Boulahjar, Julie Charton, Corentin Houze, Michaël Howsam, Anne-Catherine Servais, Marianne Fillet, Emmanuelle Lipka
Cyclodextrin capillary electrophoresis methods (CD-CZE) were developed for complete enantiomeric and diastereoisomeric separations of a series of ten dihydropyridone analogues, of which eight were neutral, one was anionic and one was cationic. Ten different systems comprising one or two cyclodextrins were found to successfully separate the isomers thanks to a screening approach. Among the tested cyclodextrins, HS-γ-CD, either in a single or in a dual system, in a phosphate buffer using capillaries dynamically coated with polyethylene oxide (PEO), and SBE-β-CD, either in a single or in a dual system, in a borate buffer using uncoated capillaries, were the most selective selectors...
April 22, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28432770/chiral-separation-of-aryloxyphenoxy-propionate-herbicides-in-a-permethyl-%C3%AE-cyclodextrin-based-column-influence-of-temperature-and-mobile-phase-composition-on-enantioselectivity
#7
Ester Lubomirsky, Héctor Di Loreto, Juan M Padró, Cecilia B Castells
We used a permethyl-β-cyclodextrin chiral stationary phase under reversed-phase conditions for the chiral separation of four aryloxyphenoxy-propionate herbicides (fenoxaprop-p-ethyl, quizalofop-p-ethyl and tefuryl and haloxyfop-p-methyl) with mixtures of methanol, ethanol, 2-propanol, n-propanol, tert-butanol, or acetonitrile and water as mobile phases and investigated the influence of mobile phase composition and column temperature (from 0 to 50 °C) on the separation. The retention factors (k) and selectivity factors (α) of all the herbicides investigated decreased with increasing temperature...
April 22, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28432695/recent-strategies-towards-microfluidic-based-surface-enhanced-raman-spectroscopy
#8
REVIEW
Anna Tycova, Jan Prikryl, Frantisek Foret
Surface enhanced Raman spectroscopy (SERS) is an extremely powerful analytical tool, which not only yields information about the molecular structure of the analyte in the form of characteristic vibrational spectrum but also gives sensitivities approaching those in fluorescence spectroscopy. The SERS measurement on the microfluidic platform provides possibility to manufacture the device with design perfectly fulfilling the needs of the application with minimal sample consumption. This review aims at describing basic strategies for SERS measurement in microfluidic devices published in the last decade and covers current trends in microfluidics with SERS detection in the field of bioanalysis and approaches towards on-line coupling of liquid-based separation techniques with SERS detection...
April 22, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28432689/viscosity-based-droplet-size-controlling-in-negative-pressure-driven-droplets-generator-for-large-scale-particle-synthesis
#9
Hanlin Li, Yijun Xue, Meng Xu, Wenfeng Zhao, Chenghua Zong, Xiaojun Liu, Qingquan Zhang
The poor control and regulation of droplets limit the applications of negative-pressure-driven-droplet-generator (NPDDG). Here, we present a simple method to control droplet size in NPDDG via varying the oil viscosity. Depending on the infinite inter-solubility of high viscous mineral oil and low viscous hexadecane, we obtain a series of oils with kinematic viscosities linearly varied from 4.2 mm(2) /s to 194.6 mm(2) /s. By using these oils as continuous phases, mono-disperse droplets are fabricated with controllable size in NPDDG...
April 22, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28432685/chiral-analysis-of-%C3%AE-diimine-ru-ii-and-fe-ii-complexes-by-capillary-electrophoresis-using-sulfated-cyclodextrins-as-stereoselectors
#10
Petra Sázelová, Dušan Koval, Lukáš Severa, Filip Teplý, Václav Kašička
Capillary electrophoresis (CE) using randomly highly sulfated α-, β-, and γ-cyclodextrins (S-α-CD, S-β-CD, S-γ-CD), sulfobutylether-β-CD (SBE-β-CD), single isomer (6-O-sulfo) α-, β-, and γ-CDs and their derivatives as stereoselectors was applied to chiral analysis of polypyridyl complexes of [Ru(bpy)3 ](2+) , [Ru(phen)3 ](2+) , and [Fe(phen)3 ](2+) (bpy = 2,2'-bipyridine; phen = 1,10 phenanthroline). The best separations of Δ- and Λ-enantiomers of the these complexes with high resolution (up to R1,2  = 7...
April 22, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28432684/characterization-of-interactions-of-metal-containing-nanoparticles-with-biomolecules-by-ce-an-update-2012-2016
#11
REVIEW
Svetlana S Aleksenko, Magdalena Matczuk, Andrei R Timerbaev
The methodological developments and applications of CE related to studying biotransformations of metal-based nanoscale particles of impending medicinal use are overviewed. This is an update to a previous review article (Aleksenko, S. S., Shmykov, A. Y., Oszwałdowski, S., Timerbaev, A. R., Metallomics 2012, 4, 1141-1148) and it covers the research papers published within the last five years. As was anticipated in that review, CE can now be seen as a customary technique in the analysis of biomolecular interactions that exert an impact on the mechanism of action of nanoparticles, comprising metabolism, delivery, cell processing, and targeting...
April 22, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28429819/effects-of-dielectrophoresis-on-thrombogenesis-in-human-whole-blood
#12
Steven Kinio, James Mills
Thrombogenesis (blood clot formation) is a major barrier to the development of biomedical devices that interface with blood. Although state-of-the-art chemically and pharmacologically mediated clot mitigation strategies are effective, some limitations of such approaches include depletion of active agents, or adverse reactions in patients. Increased clotting protein adsorption and platelet adhesion, which occurs when artificial surfaces are exposed to blood, results in enhanced clot formation on artificial surfaces...
April 21, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28429817/investigation-of-bacterial-viability-from-incubated-saliva-by-application-of-flow-cytometry-and-hyphenated-separation-techniques
#13
Bogusław Buszewski, Maciej Milanowski, Tomasz Ligor, Paweł Pomastowski
The aim of the study was determination of bacterial viability in saliva samples and finding a correlation between microbiological and volatile profiles of saliva depending on incubation time. Bacteria colonizing healthy oral cavities were also identified. Twelve healthy adults donated unstimulated saliva samples. Flow cytometry, optical density measurements and colony-forming unit (CFU) counting method were employed for analyses of native and inoculated saliva after 0, 1, 2, 24 and 48 h of incubation. Volatile profiles were acquired using headspace-solid phase microextraction-gas chromatography/mass spectrometry (HS-SPME-GC/MS)...
April 21, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28426178/multiplexing-n-glycan-analysis-by-dna-analyzer
#14
Hua-Tao Feng, Pingjing Li, Guo Rui, James Stray, Shaheer Khan, Shiaw-Min Chen, Sam F Y Li
Analysis of N-glycan structures has been gaining attentions over the years due to their critical importance to biopharma based applications and growing roles in biological research. Glycan profiling is also critical to the development of biosimilar drugs. The detailed characterization of N-glycosylation is mandatory because it is a non-template driven process and that significantly influences critical properties such as bio-safety and bio-activity. The ability to comprehensively characterize highly complex mixtures of N-glycans has been analytically challenging and stimulating because of the difficulties in both the structure complexity and time-consuming sample pretreatment procedures...
April 20, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28426159/open-microfluidic-gel-electrophoresis-rapid-and-low-cost-separation-and-analysis-of-dna-at-the-nanoliter-scale
#15
Ludwig Gutzweiler, Tobias Gleichmann, Laurent Tanguy, Peter Koltay, Roland Zengerle, Lutz Riegger
Gel electrophoresis is one of the most applied and standardized tools for separation and analysis of macromolecules and their fragments in academic research and in industry. In this work we present a novel approach for conducting on-demand electrophoretic separations of DNA molecules in open microfluidic (OM) systems on planar polymer substrates. The approach combines advantages of slab gel, capillary- & chip-based methods offering low consumable costs (<0.1 $) circumventing cost intensive microfluidic chip fabrication, short process times (5 minutes per analysis) and high sensitivity (4 ng/μl dsDNA) combined with reasonable resolution (17 bases)...
April 20, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28426136/differentiating-signals-to-make-biological-sense-a-guide-through-databases-for-ms-based-non-targeted-metabolomics
#16
REVIEW
Alberto Gil de la Fuente, Emily Grace Armitage, Abraham Otero, Coral Barbas, Joanna Godzien
Metabolite identification is one of the most challenging steps in metabolomics studies and reflects one of the greatest bottlenecks in the entire workflow. The success of this step determines the success of the entire research, therefore the quality at which annotations are given requires special attention. A variety of tools and resources are available to aid metabolite identification or annotation, offering different and often complementary functionalities. In preparation for this article, almost 50 databases were reviewed, from which 17 were selected for discussion, chosen for their on-line ESI-MS functionality...
April 20, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28421618/diffusiophoresis-of-a-charged-particle-in-a-microtube
#17
Han C Chiu, Huan J Keh
The diffusiophoresis of a charged sphere along the axis of a circular microtube filled with an electrolyte solution is studied theoretically. The tube wall may be either nonconductive and impermeable or prescribed with a linear electrolyte concentration distribution. The electric double layers at the solid surfaces are thin, but the diffuse-layer polarization effect over the particle surface is considered. The general solutions to the electrokinetic differential equations are expressed in spherical and cylindrical coordinates, whereas the boundary conditions at the particle surface are satisfied by a collocation technique...
April 19, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28418619/determination-of-lipoic-acid-in-human-urine-by-capillary-zone-electrophoresis
#18
Paweł Kubalczyk, Rafał Głowacki
Fast, simple and accurate CE method enabling determination of lipoic acid (LA) in human urine has been developed and validated. LA is a disulfide-containing natural compound absorbed from the organism's diet. Due to powerful antioxidant activity, LA has been used for prevention and treatment of various diseases and disorders, e.g. cardiovascular diseases, neurodegenerative disorders and cancer. The proposed analytical procedure consists of liquid-liquid sample extraction, reduction of LA with tris(2-carboxyethyl)phosphine, derivatization with 1-benzyl-2-chloropyridinium bromide (BCPB) followed by field amplified sample injection stacking, capillary zone electrophoresis separation and ultraviolet-absorbance detection of LA-BCPB derivative at 322 nm...
April 18, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28418580/effect-of-surfactant-species-and-electrophoretic-medium-composition-on-the-electrophoretic-behavior-of-neutral-and-water-insoluble-linear-synthetic-polymers-in-nonaqueous-capillary-zone-electrophoresis
#19
Nao Fukai, Shinya Kitagawa, Hajime Ohtani
We have recently demonstrated the separation of neutral and water-insoluble linear synthetic polymers in non-aqueous capillary zone electrophoresis (NACZE) using a cationic surfactant of cetyltrimethylammonium chloride (CTAC). In this study, eight ionic surfactants were investigated for the separation of four synthetic polymers (polystyrene, polymethylmethacrylates, polybutadiene, and polycarbonate); only three surfactants (CTAC, dimethyldioctadecylammonium bromide, and sodium dodecylsulfate) caused their separation...
April 18, 2017: Electrophoresis
https://www.readbyqxmd.com/read/28401988/a-rapid-nuclear-staining-test-using-cationic-dyes-contributes-to-efficient-str-analysis-of-telogen-hair-roots
#20
So-Yeon Lee, Eun-Ju Ha, Seung-Kyun Woo, So-Min Lee, Kyung-Hee Lim, Yong-Bin Eom
Telogen hairs presented in the crime scene are commonly encountered as trace evidence. However, short tandem repeat (STR) profiling of the hairs currently have low and limited use due to poor success rate. To increase the success rate of STR profiling of telogen hairs, we developed a rapid and cost-effective method to estimate the number of nuclei in the hair roots. Five cationic dyes, Methyl green (MG), Harris hematoxylin (HH), Methylene blue (MB), Toluidine blue (TB) and Safranin O (SO) were evaluated in this study...
April 12, 2017: Electrophoresis
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