journal
MENU ▼
Read by QxMD icon Read
search

Journal of Neuroscience Methods

journal
https://www.readbyqxmd.com/read/28322859/decoding-the-encoding-of-functional-brain-networks-an-fmri-classification-comparison-of-non-negative-matrix-factorization-nmf-independent-component-analysis-ica-and-sparse-coding-algorithms
#1
Jianwen Xie, Pamela K Douglas, Ying Nian Wu, Arthur L Brody, Ariana E Anderson
BACKGROUND: Brain networks in fMRI are typically identified using spatial independent component analysis (ICA), yet other mathematical constraints provide alternate biologically-plausible frameworks for generating brain networks. Non-negative Matrix Factorization (NMF) would suppress negative BOLD signal by enforcing positivity. Spatial sparse coding algorithms (L1 Regularized Learning and K-SVD) would impose local specialization and a discouragement of multitasking, where the total observed activity in a single voxel originates from a restricted number of possible brain networks...
March 17, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28300605/a-rapid-quantification-of-binocular-misalignment-without-recording-eye-movements-vertical-and-torsional-alignment-nulling
#2
Kara H Beaton, Mark J Shelhamer, Dale C Roberts, Michael C Schubert
BACKGROUND: Small, innate asymmetries between the left and right otolith organs can cause ocular misalignment with symptoms that include double vision and motion sickness. Additionally, ocular misalignment affects nearly 5% of the US population. We have developed a portable, non-invasive technology that uses subjective perception of binocular visual signals to estimate relative binocular alignment. NEW METHOD AND RESULTS: The Vertical Alignment Nulling (VAN) and Torsional Alignment Nulling (TAN) tests ask subjects to view one red and one blue line on a tablet computer while looking through color-matched red and blue filters so that each eye sees only one of the lines...
March 11, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28286064/predicting-conversion-from-mci-to-ad-using-resting-state-fmri-graph-theoretical-approach-and-svm
#3
Seyed Hani Hojjati, Ata Ebrahimzadeh, Ali Khazaee, Abbas Babajani-Feremi
BACKGROUND: We investigated identifying patients with mild cognitive impairment (MCI) who progress to Alzheimer's disease (AD), MCI converter (MCI-C), from those with MCI who do not progress to AD, MCI non-converter (MCI-NC), based on resting-state fMRI (rs-fMRI). NEW METHOD: Graph theory and machine learning approach were utilized to predict progress of patients with MCI to AD using rs-fMRI. Eighteen MCI converts (average age 73.6 years; 11 male) and 62 age-matched MCI non-converters (average age 73...
March 9, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28284687/development-of-induced-glioblastoma-by-implantation-of-a-human-xenograft-in-yucatan-minipig-as-a-large-animal-model
#4
Mehrdad Khoshnevis, Claude Carozzo, Catherine Bonnefont-Rebeix, Sara Belluco, Olivia Leveneur, Thomas Chuzel, Elodie Pillet-Michelland, Matthieu Dreyfus, Thierry Roger, François Berger, Frédérique Ponce
BACKGROUND: Glioblastoma is the most common and deadliest primary brain tumor for humans. Despite many efforts toward the improvement of therapeutic methods, prognosis is poor and the disease remains incurable with a median survival of 12-14.5 months after an optimal treatment. To develop novel treatment modalities for this fatal disease, new devices must be tested on an ideal animal model before performing clinical trials in humans. NEW METHOD: A new model of induced glioblastoma in Yucatan minipigs was developed...
March 9, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28286110/fast-transdifferentiation-of-human-wharton-s-jelly-mesenchymal-stem-cells-into-neurospheres-and-nerve-like-cells
#5
A R Bonilla-Porras, C Velez-Pardo, M Jimenez-Del-Rio
BACKGROUND: The human mesenchymal stem cells derived from Wharton's jelly tissue (hWJ-MSCs) represent a tool for cell-based therapies and regenerative medicine. hWJ-MSCs form neurospheres (NSs) within 3-7 days. No data is available to establish the neuro-phenotypic markers and time of formation of nerve-like (NLCs) and glial cells from NSs derived from hWJ-MSCs. NEW METHOD: hWJ-MSCs were incubated with Fast-N-Spheres medium for 24 and 72h. The new formed NSs were in turn incubated with forskolin in neurogenic NeuroForsk medium for 1-7days...
March 8, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28279735/development-of-a-pharmacodynamic-biomarker-to-measure-target-engagement-from-inhibition-of-the-ngf-trka-pathway
#6
Eric A Price, Alicja Krasowska-Zoladek, Kausik K Nanda, Shawn J Stachel, Darrell A Henze
BACKGROUND: NGF signaling through TrkA triggers pathways involved in a wide range of biological effects. Clinical trials targeting either NGF or TrkA are ongoing to treat various diseases in the areas of oncology, neuroscience, and for pain, but there is no described measure of target engagement of TrkA in these studies. NEW METHOD: We have developed custom ELISA assays to measure NGF-induced phosphorylation of TrkA specific for rodent and human receptors. Optimized tissue processing methods allow for detection in both the brain and in skin...
March 7, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28274738/labeling-of-neuronal-morphology-using-custom-diolistic-techniques
#7
Lyon H Hough, Michael E Brown
BACKGROUND: Diolistic labeling is increasingly utilized in neuroscience as an efficient, reproducible method for visualization of neuronal morphology. The use of lipophilic carbocyanine dyes, combined with particle-mediated biolistic delivery allows for non-toxic fluorescent labeling of multiple neurons in both living and fixed tissue. Since first described, this labeling method has been modified to fit a variety of research goals and laboratory settings. NEW METHOD: Diolistic labeling has traditionally relied on commercially available devices for the propulsion of coated micro-particles into tissue sections...
March 6, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28268105/prolonged-striatal-disinhibition-as-a-chronic-animal-model-of-tic-disorders
#8
Esther Vinner, Michal Israelashvili, Izhar Bar-Gad
BACKGROUND: Experimental findings and theoretical models have associated Tourette syndrome with abnormal striatal inhibition. The expression of tics, the hallmark symptom of this disorder, has been transiently induced in non-human primates and rodents by the injection of GABAA antagonists into the striatum, leading to temporary disinhibition. NEW METHOD: The novel chronic model of tic expression utilizes mini-osmotic pumps implanted subcutaneously in the rat back for prolonged infusion of bicuculline into the dorsolateral striatum...
March 4, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28267565/automating-cell-detection-and-classification-in-human-brain-fluorescent-microscopy-images-using-dictionary-learning-and-sparse-coding
#9
Maryana Alegro, Panagiotis Theofilas, Austin Nguy, Patricia A Castruita, William Seeley, Helmut Heinsen, Daniela M Ushizima, Lea T Grinberg
BACKGROUND: Immunofluorescence (IF) plays a major role in quantifying protein expression in situ and understanding cell function. It is widely applied in assessing disease mechanisms and in drug discovery research. Automation of IF analysis can transform studies using experimental cell models. However, IF analysis of postmortem human tissue relies mostly on manual interaction, often subjected to low-throughput and prone to error, leading to low inter and intra-observer reproducibility...
March 4, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28249674/corrigendum-to-animal-models-of-resistance-exercise-and-their-application-to-neuroscience-research-j-neurosci-methods-273-2016-191-200
#10
Justin C Strickland, Mark A Smith
No abstract text is available yet for this article.
February 26, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28238859/automated-selective-disruption-of-slow-wave-sleep
#11
Sharon J Ooms, John M Zempel, David M Holtzman, Yo-El S Ju
BACKGROUND: Slow wave sleep (SWS) plays an important role in neurophysiologic restoration. Experimentally testing the effect of SWS disruption previously required highly time-intensive and subjective methods. Our goal was to develop an automated and objective protocol to reduce SWS without affecting sleep architecture. NEW METHOD: We developed a custom Matlab™ protocol to calculate electroencephalogram spectral power every 10s live during a polysomnogram, exclude artifact, and, if measurements met criteria for SWS, deliver increasingly louder tones through earphones...
February 24, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28238858/automatic-detection-of-periods-of-slow-wave-sleep-based-on-intracranial-depth-electrode-recordings
#12
Chrystal M Reed, Kurtis G Birch, Jan Kamiński, Shannon Sullivan, Jeffrey M Chung, Adam N Mamelak, Ueli Rutishauser
BACKGROUND: An automated process for sleep staging based on intracranial EEG data alone is needed to facilitate research into the neural processes occurring during slow wave sleep (SWS). Current manual methods for sleep scoring require a full polysomnography (PSG) set-up, including electrooculography (EOG), electromyography (EMG), and scalp electroencephalography (EEG). This set-up can be technically difficult to place in the presence of intracranial EEG electrodes. There is thus a need for a method for sleep staging based on intracranial recordings alone...
February 24, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28237575/modeling-tics-in-rodents-conceptual-challenges-and-paths-forward
#13
Marco Bortolato, Christopher Pittenger
BACKGROUND: Recent advances in our understanding of the neurobiology of tics have led to the development of novel rodent models capturing different pathophysiological and phenotypic aspects of Tourette syndrome. The proliferation of these models, however, raises vexing questions on what standards should be adopted to assess their theoretical validity and empirical utility. Assessing the homology of a rodent motoric burst with a tic remains problematic, due to our incomplete knowledge of the underpinnings of tics, their high phenotypic complexity and variability, limitations in our ability test key aspects of tic phenomenology (such as premonitory sensory phenomena) in animals, and between-species differences in neuroanatomy and behavioral repertoire...
February 22, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28223023/analysis-of-facial-expressions-in-parkinson-s-disease-through-video-based-automatic-methods
#14
Andrea Bandini, Silvia Orlandi, Hugo Jair Escalante, Fabio Giovannelli, Massimo Cincotta, Carlos A Reyes-Garcia, Paola Vanni, Gaetano Zaccara, Claudia Manfredi
BACKGROUND: The automatic analysis of facial expressions is an evolving field that finds several clinical applications. One of these applications is the study of facial bradykinesia in Parkinson's disease (PD), which is a major motor sign of this neurodegenerative illness. Facial bradykinesia consists in the reduction/loss of facial movements and emotional facial expressions called hypomimia. NEW METHOD: In this work we propose an automatic method for studying facial expressions in PD patients relying on video-based METHODS: 17 Parkinsonian patients and 17 healthy control subjects were asked to show basic facial expressions, upon request of the clinician and after the imitation of a visual cue on a screen...
February 20, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28219726/diagnostic-value-of-sleep-stage-dissociation-as-visualized-on-a-2-dimensional-sleep-state-space-in-human-narcolepsy
#15
Anders Vinther Olsen, Jens Stephansen, Eileen Leary, Paul E Peppard, Hong Sheungshul, Poul Jenum, Helge Sorensen, Emmanuel Mignot
BACKGROUND: Type 1 narcolepsy (NT1) is characterized by symptoms believed to represent Rapid Eye Movement (REM) sleep stage dissociations, occurrences where features of wake and REM sleep are intermingled, resulting in a mixed state. We hypothesized that sleep stage dissociations can be objectively detected through the analysis of nocturnal Polysomnography (PSG) data, and that those affecting REM sleep can be used as a diagnostic feature for narcolepsy. NEW METHOD: A Linear Discriminant Analysis (LDA) model using 38 features extracted from EOG, EMG and EEG was used in control subjects to select features differentiating wake, stage N1, N2, N3 and REM sleep...
February 20, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28219725/planar-implantable-sensor-for-in-vivo-measurement-of-cellular-oxygen-metabolism-in-brain-tissue
#16
Vassiliy Tsytsarev, Fatih Akkentli, Elena Pumbo, Qinggong Tang, Yu Chen, Reha S Erzurumlu, Dmitri B Papkovsky
BACKGROUND: Brain imaging methods are continually improving. Imaging of the cerebral cortex is widely used in both animal experiments and charting human brain function in health and disease. Among the animal models, the rodent cerebral cortex has been widely used because of patterned neural representation of the whiskers on the snout and relative ease of activating cortical tissue with whisker stimulation. NEW METHOD: We tested a new planar solid-state oxygen sensor comprising a polymeric film with a phosphorescent oxygen-sensitive coating on the working side, to monitor dynamics of oxygen metabolism in the cerebral cortex following sensory stimulation...
February 20, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28214528/adaptive-independent-vector-analysis-for-multi-subject-complex-valued-fmri-data
#17
Li-Dan Kuang, Qiu-Hua Lin, Xiao-Feng Gong, Fengyu Cong, Vince D Calhoun
BACKGROUND: Complex-valued fMRI data can provide additional insights beyond magnitude-only data. However, independent vector analysis (IVA), which has exhibited great potential for group analysis of magnitude-only fMRI data, has rarely been applied to complex-valued fMRI data. The main challenges in this application include the extremely noisy nature and large variability of the source component vector (SCV) distribution. NEW METHOD: To address these challenges, we propose an adaptive fixed-point IVA algorithm for analyzing multiple-subject complex-valued fMRI data...
February 16, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28192129/optimized-solubilization-of-trizol-precipitated-protein-permits-western-blotting-analysis-to-maximize-data-available-from-brain-tissue
#18
Ashley M Kopec, Phillip D Rivera, Michael J Lacagnina, Richa Hanamsagar, Staci D Bilbo
BACKGROUND: Techniques simultaneously assessing multiple levels of molecular processing are appealing because molecular signaling underlying complex neural phenomena occurs at complementary levels. The TRIzol method isolates RNA and DNA, but protein retrieval is difficult due to inefficient solubilization of precipitated protein pellets. NEW METHOD: We optimized a buffer for the efficient solubilization of protein from TRIzol-precipitated brain tissue for Western blotting analysis, which was also more effective at directly homogenizing brain tissue than RIPA buffer...
February 13, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28192130/ielvis-an-open-source-matlab-toolbox-for-localizing-and-visualizing-human-intracranial-electrode-data
#19
David M Groppe, Stephan Bickel, Andrew R Dykstra, Xiuyuan Wang, Pierre Mégevand, Manuel R Mercier, Fred A Lado, Ashesh D Mehta, Christopher J Honey
BACKGROUND: Intracranial electrical recordings (iEEG) and brain stimulation (iEBS) are invaluable human neuroscience methodologies. However, the value of such data is often unrealized as many laboratories lack tools for localizing electrodes relative to anatomy. To remedy this, we have developed a MATLAB toolbox for intracranial electrode localization and visualization, iELVis. NEW METHOD: iELVis uses existing tools (BioImage Suite, FSL, and FreeSurfer) for preimplant magnetic resonance imaging (MRI) segmentation, neuroimaging coregistration, and manual identification of electrodes in postimplant neuroimaging...
February 10, 2017: Journal of Neuroscience Methods
https://www.readbyqxmd.com/read/28185890/recording-the-human-brainstem-frequency-following-response-in-the-free-field
#20
Nuno Gama, Isabelle Peretz, Alexandre Lehmann
BACKGROUND: The human auditory brainstem frequency-following response (FFR) is an objective measure used to investigate the brainstem's encoding ability of sounds. Traditionally, FFRs are recorded under close-field conditions (earphones), but free-field stimulations (loudspeaker) have yet to be attempted, which would increase the applications of FFRs by making this technique accessible to those who cannot wear inserted transducers. Here we test the feasibility and reliability of measuring speech ABRs across free and close-field...
February 7, 2017: Journal of Neuroscience Methods
journal
journal
27653
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"