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https://www.readbyqxmd.com/read/30021132/transcription-activity-of-transposon-sequence-limits-sleeping-beauty-transposition
#1
Orsolya Kolacsek, Tamás I Orbán
Sleeping Beauty (SB) transposon based technology has been extensively applied in basic research and biotechnology for routine cell culture gene delivery and vertebrate transgenesis, and it is also investigated in various gene therapy applications. Cell tolerance for the transgene is a key factor during transgenesis and is modulated not only through the type but by the dose of expression. Our experimental results exemplify that transgenes regulated with high activity promoters can reduce the overall success of gene delivery...
July 15, 2018: Gene
https://www.readbyqxmd.com/read/30021131/transcriptomic-hallmarks-of-bone-remodelling-revealed-by-rna-seq-profiling-in-blood-of-arabian-horses-during-racing-training-regime
#2
M Stefaniuk-Szmukier, K Ropka-Molik, K Piórkowska, K Żukowski, M Bugno-Poniewierska
The impact of exercises on young developing organisms is still of interest to researchers. Similarly like Thoroughbreds, Arabian horses competing at the race track. The high percent of lameness and loss of days in training are often the result of weakness in the condition of the musculoskeletal system. The objective of the presented study was to identify by RNA-Seq method, the possible skeletal system originating transcriptomic profile in peripheral blood of Arabian horses undergoing race training. Obtained results showed that one of the most significantly deregulated pathway involved in bone homeostasis was those involved in osteoclast differentiation...
July 15, 2018: Gene
https://www.readbyqxmd.com/read/30021130/diverse-roles-of-fatty-acid-binding-proteins-fabps-in-development-and-pathogenesis-of-cancers
#3
REVIEW
Mina Amiri, Saghar Yousefnia, Farzad Seyed Forootan, Maryam Peymani, Kamran Ghaedi, Mohammad Hossein Nasr Esfahani
One of the most importantly involved pathways in cancer development is fatty-acid signaling pathway. Synthesized lipids as energetic sources are consumed by cancer cells for proliferation, growth, survival, invasion and angiogenesis. Fatty acids as signaling compounds regulate metabolic and transcriptional networks, survival pathways and inflammatory responses. Aggregation of fatty acids with fatty acid binding proteins (FABPs) facilitates their transportation to different cell organelles. FABPs, a group of lipid binding proteins modulate fatty acid metabolism, cell growth and proliferation and cancer development...
July 15, 2018: Gene
https://www.readbyqxmd.com/read/30021129/complete-mitochondrial-genome-of-the-first-deep-sea-spongicolid-shrimp-spongiocaris-panglao-decapoda-stenopodidea-novel-gene-arrangement-and-the-phylogenetic-position-and-origin-of-stenopodidea
#4
Shao'e Sun, Zhongli Sha, Yanrong Wang
Stenopodidea Claus, 1872 (Crustacea: Decapoda) is one of the major groups of decapods crustaceans. Hitherto, only one complete mitochondrial genome (mitogenome) from the family Stenopodidae is available for the infraorder Stenopodidea. Here, we determined the complete mitogenome of Spongiocaris panglao de Grave and Saito, 2016 using Illumina sequencing, representing the first species from the family Spongicolidae. The 15,909 bp genome is a circular molecule and consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes and one control region...
July 15, 2018: Gene
https://www.readbyqxmd.com/read/30016670/identification-of-micrornas-involved-in-cold-adaptation-of-litopenaeus-vannamei-by-high-throughput-sequencing
#5
Pingping He, Pinyuan Wei, Bin Zhang, Yongzhen Zhao, Qiangyong Li, Xiuli Chen, Digang Zeng, Min Peng, Chunling Yang, Jinxia Peng, Xiaohan Chen
The Litopenaeus vannamei (L. vannamei) is one of the most widely cultured shrimp species in the world, with low temperature being one of the most serious threats to its growth and survival. To examine the potential regulatory mechanism of cold adaptation, we conducted a microRNAs (miRNAs) analysis on the hepatopancreas of L. vannamei under normal temperature 28 °C (M28), cold acclimation 16 °C for 6 days (M16), and recovered under normal temperature (MR). In total 14,754,823, 14,945,246 and 15,880,093 raw reads representing 10,690,259, 8,587,144, and 11,512,941 unique sequences of 18-32 nt length were obtained from the M28, M16 and MR libraries, respectively...
July 14, 2018: Gene
https://www.readbyqxmd.com/read/30016669/genome-wide-dna-methylation-analysis-of-the-regenerative-and-non-regenerative-tissues-in-sika-deer-cervus-nippon
#6
Chun Yang, Yan Zhang, Yanyan Song, Xiao Lu, Hang Gao
Deer antlers, the secondary organs of deer, are a unique model to study regeneration of organ/tissue in mammals. Pedicle periosteum (PP) is the key tissue type for antler regeneration. Based on our previous study, the DNA methylation was found to be the basic molecular mechanism underlying the antler regeneration. In this study, we compare the genome-wide DNA methylation level in regenerative tissues (the potentiated PP of antler, muscle, heart and liver) and non-regenerative tissue (the dormant PP) of deer by the fluorescence-labeled methylation-sensitive amplified polymorphism (F-MSAP) method...
July 14, 2018: Gene
https://www.readbyqxmd.com/read/30016668/decreased-circular-rna-hsa_circ_0001649-predicts-unfavorable-prognosis-in-glioma-and-exerts-oncogenic-properties-in-vitro-and-in-vivo
#7
Yu Wang, Xin Sui, Hong Zhao, Ling Cong, Yu Li, Ting Xin, Mingxing Guo, Wenbo Hao
Glioma is a devastating disease with increasing incidence worldwide. Circular RNAs (circRNAs) was demonstrated to be involved in a wide range of pathophysiological processes, including tumorigenesis and development. Recently, the abnormally expressed hsa_circ_0001649 was found in several malignancies. In the current study, the expression levels of hsa_circ_0001649 in glioma and its clinical significance were explored. The biological functions including cell growth, colony-forming ability and apoptosis altered by hsa_circ_0001649 were further investigated in vitro...
July 14, 2018: Gene
https://www.readbyqxmd.com/read/30012425/conserved-structure-and-function-of-chemokine-cxcl8-between-chinese-tree-shrews-and-humans
#8
Zongmin Jiang, Bo Gao, Min Hu, Lei Ding, Zhenwei Lan, Min Yu, Haijing Yu, Qinghua Cui, Jie Lin, Meizhang Li
Chemokines represent a superfamily of small secretion proteins that functionally mediate immune cell transmigration in normal or inflammatory conditions. Although anatomic and polygenetic evidence suggests that tree shrews are primate-like species, understanding of the structure and function of tree shrew chemokines has only just commenced. In this study, we cloned tree shrew chemokine CXCL8 and its cognate receptors. Predicted three-dimensional (3D) structures showed that binding domains in CXCL8 and CXCR1/2 were highly conserved between tree shrews and humans...
July 13, 2018: Gene
https://www.readbyqxmd.com/read/30012424/first-identification-of-homozygous-truncating-csrp3-variants-in-two-unrelated-cases-with-hypertrophic-cardiomyopathy
#9
Alexandre Janin, Francis Bessière, Samuel Chauveau, Philippe Chevalier, Gilles Millat
Hypertrophic cardiomyopathy (HCM) is the most common inherited cardiovascular disease with an estimated prevalence of 1/500. More than 40 genes have been reported to cause HCM. Among them, CSRP3 is usually included on HCM gene panels used for molecular diagnosis by next-generation sequencing (NGS). To provide new insights into the pathophysiology of hypertrophic cardiomyopathy, a NGS workflow based on a panel of 48 cardiomyopathies-causing genes was analyzed on a cohort of 542 HCM patients. As expected, this molecular approach led to identify most pathogenic or likely pathogenic variants into prevalent HCM-causing genes: MYBPC3 (123/542; 22...
July 13, 2018: Gene
https://www.readbyqxmd.com/read/30010042/evaluation-of-serum-slco1b1-levels-and-genetic-variants-of-slco1b1-rs4149056-and-rs2306283-in-patients-with-early-and-exudative-age-related-macular-degeneration
#10
Rasa Liutkeviciene, Alvita Vilkeviciute, Aiste Slavinskaite, Aiste Petrauskaite, Vacis Tatarunas, Loresa Kriauciuniene
PURPOSE: To determine SLCO1B1 rs4149056 and rs2306283 gene polymorphisms and SLCO1B1 serum levels in patients with early and exudative age-related macular degeneration. MATERIALS AND METHODS: The study enrolled 206 patients with exudative AMD, 253 patients with early AMD and 301 control subjects. DNA was extracted from peripheral venous blood leukocytes using commercial kits. Genotyping of SLCO1B1 rs4149056 and rs2306283 was carried out using a real-time polymerase chain reaction (RT-PCR) method...
July 13, 2018: Gene
https://www.readbyqxmd.com/read/30010041/dynamic-expression-of-vasotocin-and-isotocin-receptor-genes-in-the-marbled-eel-anguilla-marmorata-following-osmotic-challenges
#11
Quanquan Cao, Fenfei Liang, Dan Wang, Xinyu Zhang, Catherine Lorin-Nebel, Jie Gu, Shaowu Yin
To examine the physiological roles of arginine vasotocin receptor (AVTR) and isotocin receptor (ITR) in osmoregulation of a euryhaline teleost, the marbled eel (Anguilla marmorata), three different genes coding for AVTRV1a2, AVTRV2 and ITR were cloned by screening an A. marmorata cDNA library. These receptors were expressed differentially and ubiquitously in the eight tissues we examined. The changes in mRNA expression levels of AVTRV1a2, AVTRV2, and ITR were assessed in a time-course study following salinity transfer from fresh water (FW, 0‰) to fresh water (FW, 0‰), brackish water (BW, 10‰) or saline water (SW, 25‰)...
July 13, 2018: Gene
https://www.readbyqxmd.com/read/30010040/transcriptome-analyses-reveal-genes-of-alternative-splicing-associated-with-muscle-development-in-chickens
#12
Zhixiong Li, Yaou Xu, Yaqiu Lin
Alternative splicing (AS) of pre-mRNA is a central mode of genetic regulation in higher eukaryotes. High-throughput experimental verification of alternative splice forms, functional characterization, and regulation of alternative splicing are key directions for research. However, little information is available on the transcriptome-wide changes during different ages in different chicken breeds. In this study, the sequencing reads of chicken muscle tissues collected from White feather broiler (day 42) and Luning Chicken (day 70, 120, 150) were mapped to the chicken genome...
July 13, 2018: Gene
https://www.readbyqxmd.com/read/30010039/use-of-modified-u1-small-nuclear-rna-for-rescue-from-exon-7-skipping-caused-by-5-splice-site-mutation-of-human-cathepsin-a-gene
#13
Naoshi Yamazaki, Keisuke Kanazawa, Maria Kimura, Hironobu Ike, Makiko Shinomiya, Shouko Tanaka, Yasuo Shinohara, Noriaki Minakawa, Kohji Itoh, Yoshiharu Takiguchi
Cathepsin A (CTSA) is a multifunctional lysosomal enzyme, and its hereditary defect causes an autosomal recessive disorder called galactosialidosis. In a certain number of galactosialidosis patients, a base substitution from adenine to guanine is observed at the +3 position of the 7th intron (IVS7 +3a>g) of the CTSA gene. With this mutation, a splicing error occurs; and consequently mRNA lacking the 7th exon is produced. This skipping of exon 7 causes a frame shift of the transcripts, resulting in a non-functional CTSA protein and hence galactosialidosis...
July 13, 2018: Gene
https://www.readbyqxmd.com/read/30017738/correlation-study-between-ada-and-ifn-%C3%AE-gene-polymorphisms-and-the-risk-of-developing-tuberculous-pericarditis
#14
Fangming Zhong, Tao Dai, Yu Sheng
OBJECTIVE: To study the correlation between adenosine deaminase (ADA) and IFN-γ gene polymorphism and the risk of tuberculous pericarditis (TBP). METHODS: Two-hundred and forty-five patients with TBP were enrolled as a study group, including 140 males and 105 females. According to the general information of TBP patients in the study group, 115 patients with non-tuberculous pericarditis were recruited as the control group. Four ADA single nucleotide polymorphisms (SNPs; rs121908715, rs79281338, rs121908723, and rs61737144) and the rs2069707 locus of the IFN-γ polymorphism were detected using PCR and Sanger sequencing...
July 12, 2018: Gene
https://www.readbyqxmd.com/read/30017735/single-nucleotide-polymorphisms-of-the-adherent-junction-component-cadherin-gene-are-associated-with-leukoaraiosis
#15
Binod Kumar Yadav, Byoung-Soo Shin
BACKGROUND: Leukoaraiosis (LA) is one of the manifestations of cerebral small vessel disease. Blood-brain barrier (BBB) disruption plays a key role in LA. Cadherin is a component of adherent junctions (AJ), which play a crucial role in cell-cell adhesion, cell-cell recognition and homeostasis in BBB development. We hypothesized that alterations in cadherin genes might be a potential cause of BBB abnormalities that result in LA. METHODS: A total of 339 LA individuals (LA-PVWM, 183; LA-DWM 156) were enrolled, who underwent brain magnetic resonance imaging with obtainable vascular risk factors...
July 12, 2018: Gene
https://www.readbyqxmd.com/read/30010038/horizontal-transfer-of-exosomal-cxcr4-promotes-murine-hepatocarcinoma-cell-migration-invasion-and-lymphangiogenesis
#16
Min Li, Ying Lu, Yunchao Xu, Jingwen Wang, Chenghong Zhang, Yue Du, Lu Wang, Lianhong Li, Bo Wang, Jie Shen, Jianwu Tang, Bo Song
Exosomes have been demonstrated as important factor to influence cancer invasion and metastasis. Previous studies have shown that CXC chemokine recepter-4 (CXCR4) and stromal cell-derived factor-1α (SDF-1α) mediates matrix metalloproteinases (MMPs) secretions to facilitate lymph node metastasis of hepatocarcinoma cells. In this study, we demonstrated that exosomes containing elevated CXCR4 from high lymph node metastatic mouse hepatocarcinoma Hca-F cells were able to promote the migration and invasion of a paired syngeneic Hca-P cells that have low metastatic potential...
July 12, 2018: Gene
https://www.readbyqxmd.com/read/30010037/hypermethylated-lats2-gene-with-decreased-expression-in-female-breast-cancer-a-case-control-study-from-north-india
#17
Sadaf, Maria Habib, Mohammad Aasif Khan, Mohammad Zeeshan Najm, Mohd Nasar Mallick, Kumari Sunita, N K Shukla, S V S Deo, Syed Akhtar Husain
BACKGROUND: LATS2, a presumed tumor suppressor gene located on chromosome 13q11-12 is involved in cell growth related activity like regulation of cell cycle at G1/S. The reduced expression of LATS2 has been reported in many tumors; including tumors of Breast, which is to the best of our knowledge has not been studied in north Indian female breast cancer population. OBJECTIVE: Here, we looked upon the expression pattern and methylation status of the LATS2 gene in north Indian female breast cancer cases to further strengthen its role as a tumor suppressor gene and more importantly as a cancer biomarker...
July 12, 2018: Gene
https://www.readbyqxmd.com/read/30017739/integrating-proteomic-and-transcriptomic-analyses-of-loquat-eriobotrya-japonica-lindl-in-response-to-cold-stress
#18
Xiaoming Lou, Huakun Wang, Xiaopeng Ni, Zhihong Gao, Shahid Iqbal
The expression levels of many genes and the related proteins change and regulate physiological and metabolic processes that help the plant survive harsh environmental conditions under cold stress. Damage due to cold and freezing conditions often causes dynamic loss of loquat fruits in cultivated parts of northern China. To illustrate the mechanism of cold tolerance in the loquat, we combined the transcriptomic analysis with isobaric tags for relative and absolute quantification (iTRAQ) and RNA sequencing (RNA-Seq) data from loquat leaves under 4 °C treatment...
July 11, 2018: Gene
https://www.readbyqxmd.com/read/30017737/evaluation-of-trim5-and-trim22-polymorphisms-on-treatment-responses-in-iranian-patients-with-chronic-hepatitis-c-virus-infection
#19
Setareh Mobasheri, Nazanin Irani, Abbas Akhavan Sepahi, Fatemeh Sakhaee, Fatemeh Rahimi Jamnani, Farzam Vaziri, Seyed Davar Siadat, Abolfazl Fateh
The tripartite motif (TRIM)-5 and TRIM22 are involved in innate immune response and show anti-viral activities. The current study aimed at evaluating the association of TRIM5 and TRIM22 polymorphisms with treatment outcomes in patients with chronic hepatitis C virus (CHC). TRIM5 rs3824949 and TRIM22 polymorphisms (rs7113258, rs7935564, and rs1063303) were genotyped using TaqMan polymerase chain reaction (PCR) assay in 425 treatment-naïve CHC patients. Rapid virological response (RVR), early virological response (EVR), and sustained virological response (SVR) were found in 54...
July 11, 2018: Gene
https://www.readbyqxmd.com/read/30017736/upregulation-of-circular-rna-hsa_circ_0007534-predicts-unfavorable-prognosis-for-nsclc-and-exerts-oncogenic-properties-in-vitro-and-in-vivo
#20
Yi Qi, Bingquan Zhang, Junting Wang, Mengna Yao
Emerging evidence documented the key functions of circular RNAs (circRNAs) in various malignancies. Nevertheless, the research relevant to the clinical value and functions of circRNAs in non-small cell lung cancer (NSCLC) is still very limited. In this study, we performed qRT-PCR to assess the levels of hsa_circ_0007534 in NSCLC tissues and cell lines and evaluated its clinical significance using Fisher's exact test, Kaplan-Meier analysis and Cox regression analysis. Additionally, loss-of-function and gain-of-function experiments were performed to detect whether hsa_circ_0007534 could affect cell proliferation, apoptosis, metastatic properties and epithelial-mesenchymal transition (EMT) in A549 and H1299 cells...
July 11, 2018: Gene
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