journal
MENU ▼
Read by QxMD icon Read
search

Trends in Biochemical Sciences

journal
https://www.readbyqxmd.com/read/28633974/ribosomes-dance-to-a-daily-rhythm
#1
Aishwarya Iyer, Ingrid Grummt
Sinturel et al. demonstrate that feeding-fasting rhythms and light-dark cycles direct daily changes in liver mass and cell size. These feeding-fasting- and light-dark-driven diurnal fluctuations are controlled by an unconventional mechanism that affects ribosome assembly and protein levels during the active phase.
June 17, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28629612/structural-basis-for-ribosome-rescue-in-bacteria
#2
REVIEW
Paul Huter, Claudia Müller, Stefan Arenz, Bertrand Beckert, Daniel N Wilson
Ribosomes that translate mRNAs lacking stop codons become stalled at the 3' end of the mRNA. Recycling of these stalled ribosomes is essential for cell viability. In bacteria three ribosome rescue systems have been identified so far, with the most ubiquitous and best characterized being the trans-translation system mediated by transfer-messenger RNA (tmRNA) and small protein B (SmpB). The two additional rescue systems present in some bacteria employ alternative rescue factor (Arf) A and release factor (RF) 2 or ArfB...
June 16, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28602500/dynamic-protein-acylation-new-substrates-mechanisms-and-drug-targets
#3
REVIEW
Thomas Lanyon-Hogg, Monica Faronato, Remigiusz A Serwa, Edward W Tate
Post-translational attachment of lipids to proteins is found in all organisms, and is important for many biological processes. Acylation with myristic and palmitic acids are among the most common lipid modifications, and understanding reversible protein palmitoylation dynamics has become a particularly important goal. Linking acyltransferase enzymes to disease states can be challenging due to a paucity of robust models, compounded by functional redundancy between many palmitoyl transferases; however, in cases such as Wnt or Hedgehog signalling, small molecule inhibitors have been identified, with some progressing to clinical trials...
June 8, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28592378/no-fad-no-cry-redox-and-circadian-rhythms
#4
David Pritchett, Akhilesh B Reddy
There is growing evidence of reciprocal interactions between the endogenous circadian clock and subcellular redox pathways. Recently, researchers at the University of California unearthed another possible link between redox metabolism and the mammalian circadian clock: the redox cofactor FAD stabilises the clock protein cryptochrome (CRY), modifying rhythmic clock gene expression.
June 4, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28587732/for-certain-sirt4-activities
#5
Surinder Kumar, David B Lombard
Despite the fact that SIRT4 regulates important biological processes, its primary enzymatic activity has remained ambiguous. A recent study by Anderson, Huynh et al. has uncovered deacylase activities of SIRT4 towards newly described lysine modifications derived from reactive acyl-CoAs generated in leucine catabolism.
June 3, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28579196/a-puzzle-of-life-crafting-ribosomal-subunits
#6
REVIEW
Dieter Kressler, Ed Hurt, Jochen Baßler
The biogenesis of eukaryotic ribosomes is a complicated process during which the transcription, modification, folding, and processing of the rRNA is coupled with the ordered assembly of ∼80 ribosomal proteins (r-proteins). Ribosome synthesis is catalyzed and coordinated by more than 200 biogenesis factors as the preribosomal subunits acquire maturity on their path from the nucleolus to the cytoplasm. Several biogenesis factors also interconnect the progression of ribosome assembly with quality control of important domains, ensuring that only functional subunits engage in translation...
June 1, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28579074/cytosolic-proteostasis-networks-of-the-mitochondrial-stress-response
#7
REVIEW
Davide D'Amico, Vincenzo Sorrentino, Johan Auwerx
Mitochondrial stress requires timely intervention to prevent mitochondrial and cellular dysfunction. Re-establishing the correct protein homeostasis is crucial for coping with mitochondrial stress and maintaining cellular homeostasis. The best-characterized adaptive pathways for mitochondrial stress involve a signal originating from stressed mitochondria that triggers a nuclear response. However, recent findings have shown that mitochondrial stress also affects a complex network of protein homeostasis pathways in the cytosol...
June 1, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28579073/advances-on-the-transfer-of-lipids-by-lipid-transfer-proteins
#8
REVIEW
Louise H Wong, Alenka Čopič, Tim P Levine
Transfer of lipid across the cytoplasm is an essential process for intracellular lipid traffic. Lipid transfer proteins (LTPs) are defined by highly controlled in vitro experiments. The functional relevance of these is supported by evidence for the same reactions inside cells. Major advances in the LTP field have come from structural bioinformatics identifying new LTPs, and from the development of countercurrent models for LTPs. However, the ultimate aim is to unite in vitro and in vivo data, and this is where much progress remains to be made...
May 31, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28566215/close-encounters-probing-proximal-proteins-in-live-or-fixed-cells
#9
REVIEW
Peter Lönn, Ulf Landegren
The well-oiled machinery of the cellular proteome operates via variable expression, modifications, and interactions of proteins, relaying genomic and transcriptomic information to coordinate cellular functions. In recent years, a number of techniques have emerged that serve to identify sets of proteins acting in close proximity in the course of orchestrating cellular activities. These proximity-dependent assays, including BiFC, BioID, APEX, FRET, and isPLA, have opened up new avenues to examine protein interactions in live or fixed cells...
May 28, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28566214/the-growing-toolbox-for-protein-synthesis-studies
#10
REVIEW
Shintaro Iwasaki, Nicholas T Ingolia
Protein synthesis stands at the last stage of the central dogma of molecular biology, providing a final regulatory layer for gene expression. Reacting to environmental cues and internal signals, the translation machinery can quickly tune the translatome from a pre-existing pool of RNAs, before the transcriptome changes. Although the translation reaction itself has been known since the 1950s, the quantitative or even qualitative measurement of its efficacy in cells has posed experimental and analytic hurdles...
May 28, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28522328/inhibiting-translation-one-protein-at-a-time
#11
Matthew D Disney
Historically, translational inhibitors have been confined to anti-bacterials that globally affect translation. Lintner et al. demonstrate that small molecules can specifically inhibit translation of a single disease-associated protein by stalling the ribosome's nascent chain [1], opening up a new therapeutic strategy for 'undruggable' proteins.
May 15, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28499500/ca-2-release-channels-join-the-resolution-revolution
#12
REVIEW
Ran Zalk, Andrew R Marks
Ryanodine receptors (RyRs) are calcium release channels expressed in the sarcoendoplasmic reticula of many cell types including cardiac and skeletal muscle cells. In recent years Ca(2+) leak through RyRs has been implicated as a major contributor to the development of diseases including heart failure, muscle myopathies, Alzheimer's disease, and diabetes, making it an important therapeutic target. Recent mammalian RyR1 cryoelectron microscopy (cryo-EM) structures of multiple functional states have clarified longstanding questions including the architecture of the transmembrane (TM) pore and cytoplasmic domains, the location and architecture of the channel gate, ligand-binding sites, and the gating mechanism...
May 9, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28495334/found-in-translation-applying-lessons-from-model-systems-to-strigolactone-signaling-in-parasitic-plants
#13
REVIEW
Shelley Lumba, Asrinus Subha, Peter McCourt
Strigolactones (SLs) are small molecules that act as endogenous hormones to regulate plant development as well as exogenous cues that help parasitic plants to infect their hosts. Given that parasitic plants are experimentally challenging systems, researchers are using two approaches to understand how they respond to host-derived SLs. The first involves extrapolating information on SLs from model genetic systems to dissect their roles in parasitic plants. The second uses chemicals to probe SL signaling directly in the parasite Striga hermonthica...
May 9, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28487210/intrinsically-disordered-proteins-adaptively-reorganize-cellular-matter-during-stress
#14
Sreenivas Chavali, Alexander Gunnarsson, M Madan Babu
Intrinsically disordered proteins (IDPs) can protect cells from diverse stresses by forming higher order assemblies such as reversible aggregates or granules. Recently, Boothby et al. show that IDPs protect tardigrades against desiccation by forming a glass-like amorphous matrix, highlighting that material properties of disordered proteins can confer adaptation during stress.
May 6, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28483377/most-alternative-isoforms-are-not-functionally-important
#15
LETTER
Michael L Tress, Federico Abascal, Alfonso Valencia
No abstract text is available yet for this article.
May 5, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28483376/the-relationship-between-alternative-splicing-and-proteomic-complexity
#16
LETTER
Benjamin J Blencowe
No abstract text is available yet for this article.
May 5, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28483375/mechanisms-regulating-prc2-recruitment-and-enzymatic-activity
#17
REVIEW
Daniel Holoch, Raphaël Margueron
Polycomb repressive complex 2 (PRC2) and its histone H3 lysine-27 methylation activity are crucial for multicellular development by virtue of their role in maintaining transcriptional repression patterns. The recruitment and enzymatic activity of PRC2 are controlled by a series of intricate mechanisms whose molecular details have been emerging at a rapid pace. Recent studies have uncovered intriguing modes of PRC2 regulation by facultative PRC2 subunits, PRC1, and specific features of the chromatin environment...
May 5, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28442192/structural-insights-into-the-mechanism-of-scanning-and-start-codon-recognition-in-eukaryotic-translation-initiation
#18
REVIEW
Alan G Hinnebusch
Initiation of translation on eukaryotic mRNAs generally follows the scanning mechanism, wherein a preinitiation complex (PIC) assembled on the small (40S) ribosomal subunit and containing initiator methionyl tRNAi (Met-tRNAi) scans the mRNA leader for an AUG codon. In a current model, the scanning PIC adopts an open conformation and rearranges to a closed state, with fully accommodated Met-tRNAi, upon AUG recognition. Evidence from recent high-resolution structures of PICs assembled with different ligands supports this model and illuminates the molecular functions of eukaryotic initiation factors eIF1, eIF1A, and eIF2 in restricting to AUG codons the transition to the closed conformation...
April 22, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28438387/structural-insights-into-the-mechanism-of-group-ii-intron-splicing
#19
REVIEW
Chen Zhao, Anna Marie Pyle
While the major architectural features and active-site components of group II introns have been known for almost a decade, information on the individual stages of splicing has been lacking. Recent advances in crystallography and cryo-electron microscopy (cryo-EM) have provided major new insights into the structure of intact lariat introns. Conformational changes that mediate the steps of splicing and retrotransposition are being elucidated, revealing the dynamic, highly coordinated motions that are required for group II intron activity...
April 21, 2017: Trends in Biochemical Sciences
https://www.readbyqxmd.com/read/28416269/dna-protein-crosslink-proteolysis-repair
#20
REVIEW
Bruno Vaz, Marta Popovic, Kristijan Ramadan
Proteins that are covalently bound to DNA constitute a specific type of DNA lesion known as DNA-protein crosslinks (DPCs). DPCs represent physical obstacles to the progression of DNA replication. If not repaired, DPCs cause stalling of DNA replication forks that consequently leads to DNA double-strand breaks, the most cytotoxic DNA lesion. Although DPCs are common DNA lesions, the mechanism of DPC repair was unclear until now. Recent work unveiled that DPC repair is orchestrated by proteolysis performed by two distinct metalloproteases, SPARTAN in metazoans and Wss1 in yeast...
April 14, 2017: Trends in Biochemical Sciences
journal
journal
26849
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"