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Archives of Virology

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https://www.readbyqxmd.com/read/28229228/new-strains-of-chickpea-chlorotic-dwarf-virus-discovered-on-diseased-papaya-and-tomato-plants-in-burkina-faso
#1
Alassane Ouattara, Fidèle Tiendrébéogo, Pierre Lefeuvre, Murielle Hoareau, Sohini Claverie, Edgar Valentin Traoré, Nicolas Barro, Oumar Traoré, Arvind Varsani, Jean-Michel Lett
This is the first description of full genome sequences of chickpea chlorotic dwarf virus (CpCDV; genus Mastrevirus; family Geminiviridae) identified in papaya and tomato plants sampled in Burkina Faso. The CpCDV full genome sequences from papaya and tomato share the highest pairwise sequence identity (84% and 93.5%) with Sudanese isolates of the CpCDV-K and CpCDV-M strains, respectively. Based on the strain demarcation threshold (>94% identity) for mastreviruses, we propose two new strains, CpCDV-Q and CpCDV-R, identified in papaya and tomato, respectively...
February 22, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28224252/heat-shock-protein-70-in-lung-and-kidney-of-specific-pathogen-free-chickens-is-a-receptor-associated-protein-that-interacts-with-the-binding-domain-of-the-spike-protein-of-infectious-bronchitis-virus
#2
ZhiKun Zhang, Xin Yang, PengWei Xu, Xuan Wu, Long Zhou, HongNing Wang
Avian infectious bronchitis virus (IBV) is a member of the family Coronaviridae. A binding domain that mediates the attachment of the virus to its receptor has been identified in the S1 protein of prototype IBV strain M41. In this study, we identified this binding domain in a different strain, as well as the cellular proteins that interact with it. First, we expressed the S1N proteins (residues 19-270) of M41 and another isolate, SCZJ3, and compared the binding capacities of recombinant S1N-M41 and S1N-SCZJ3 to host tissues...
February 21, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28224251/complete-genome-sequence-of-sunflower-ring-blotch-virus-a-new-potyvirus-infecting-sunflower-in-argentina
#3
Dariel Cabrera Mederos, Nicolás Bejerman, Verónica Trucco, Soledad de Breuil, Sergio Lenardon, Fabián Giolitti
The complete genome sequence of sunflower ring blotch virus (SuRBV), a previously undescribed potyvirus infecting sunflower in Argentina, is reported. The SuRBV genome comprises 9555 nucleotides (nt) and encodes a polyprotein of 3061 amino acids, flanked by 5' and 3' untranslated regions of 117 and 255 nt, respectively. Phylogenetic analysis showed that SuRBV belongs to the potato virus Y (PVY) subgroup and clusters together with sunflower chlorotic mottle virus and bidens mosaic virus. Percentage nucleotide identity between the whole genomes of SuRBV and BiMV was 70...
February 21, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28220327/genetic-characterization-of-cacipacor%C3%A3-virus-from-ticks-collected-in-s%C3%A3-o-paulo-state-brazil
#4
Glauciane Garcia de Figueiredo, Alberto Anastacio Amarilla, William Marciel de Souza, Marcílio Jorge Fumagalli, Mário Luis Garcia de Figueiredo, Matias Pablo Juan Szabó, Soraya Jabur Badra, Yin Xiang Setoh, Alexander A Khromykh, Victor Hugo Aquino, Luiz Tadeu Moraes Figueiredo
Cacipacoré virus (CPCV) is a potential emerging virus classified in the genus Flavivirus, family Flaviviridae. In the present study, we present the genetic characterization of a CPCV isolated from ticks (Amblyomma cajennense) collected from a sick capybara (Hydrochoerus hydrochaeris) in São Paulo State, Brazil. The CPCV isolate shares the typical genomic organization of flaviviruses with 10,857 nucleotides in length and a single open reading frame of 10,284 nucleotides encoding a polyprotein of 3,427 amino acids...
February 20, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28220326/simultaneous-detection-of-severe-acute-respiratory-syndrome-middle-east-respiratory-syndrome-and-related-bat-coronaviruses-by-real-time-reverse-transcription-pcr
#5
Ji Yeong Noh, Sun-Woo Yoon, Doo-Jin Kim, Moo-Seung Lee, Ji-Hyung Kim, Woonsung Na, Daesub Song, Dae Gwin Jeong, Hye Kwon Kim
Since severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) coronaviruses (CoVs) share similar characteristics with respect to clinical signs, etiology, and transmission, methods for a rapid and accurate differential diagnosis are important. Therefore, the aim of this study was to develop a duplex real-time reverse transcription (RT)-PCR method for the simultaneous detection of these viruses. Primers and probes that target the conserved spike S2 region of human SARS-CoV, MERS-CoV, and their related bat CoVs were designed...
February 20, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28220325/characterization-of-epstein-barr-virus-encoded-small-rna-gene-variations-in-virus-associated-lymphomas-in-northern-china
#6
Zhenzhen Zhao, Lingling Sun, Song Liu, Jun Shu, Bing Luo
Epstein-Barr virus (EBV)-encoded small RNAs (EBER1 and EBER2) are highly expressed in all forms of EBV latency in EBV-associated malignancies. EBER gene variations and their association with EBV-associated disease still remain poorly characterized. To investigate the patterns of EBER gene variations and their roles in tumorigenesis, EBER gene sequences were analyzed by nested-PCR and DNA sequencing in 101 lymphomas from Northern China, a non-nasopharyngeal carcinoma (NPC) endemic area. In addition, EBV type 1 and type 2 classifications were made by using nested-PCR assays across type-specific regions in the EBNA2 gene...
February 20, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28220324/virus-surveys-of-capsicum-spp-in-the-republic-of-benin-reveal-the-prevalence-of-pepper-vein-yellows-virus-and-the-identification-of-a-previously-uncharacterised-polerovirus-species
#7
Leonard Afouda, Daouda Kone, Valerien Zinsou, Laurence Dossou, Lawrence Kenyon, Stephan Winter, Dennis Knierim
Surveys were conducted in 2014 and 2015 in Southern and Northern Benin, respectively, to identify the viruses infecting peppers (Capsicum spp.). The samples were screened by ELISA for cucumber mosaic virus (CMV), pepper veinal mottle virus (PVMV), potato virus Y (PVY) and tomato yellow leaf curl virus (TYLCV). A generic reverse transcription PCR (RT-PCR) was used to test for the presence of poleroviruses. ELISA tests confirmed the prevalence of all viruses, while the RT-PCR detected pepper vein yellows virus (PeVYV) which is reported for the first time in Benin...
February 20, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28213873/first-isolation-and-genetic-characteristics-of-porcine-sapeloviruses-in-hunan-china
#8
Taotao Yang, Runcheng Li, Wang Peng, Meng Ge, Binyu Luo, Tailong Qu, Xinglong Yu
Outbreaks of diarrhea in piglets cause serious economic consequences in China. Diarrhetic fecal samples from 20 Hunan farm piglets were tested and found to be positive for porcine epidemic diarrhea virus (PEDV) by RT-PCR, although incubation with porcine kidney (PK-15) cells failed to produce infectious PEDV. Four porcine sapelovirus (PSV) strains (designated as PSV-HuNs) were isolated from four of the samples. Genomic sequence analysis revealed open reading frames encoding polyproteins of 2,331 (HuN1, 2 and 3) and 2,332 (HuN4) amino acids...
February 17, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28213872/capulavirus-and-grablovirus-two-new-genera-in-the-family-geminiviridae
#9
Arvind Varsani, Philippe Roumagnac, Marc Fuchs, Jesús Navas-Castillo, Enrique Moriones, Ali Idris, Rob W Briddon, Rafael Rivera-Bustamante, F Murilo Zerbini, Darren P Martin
Geminiviruses are plant-infecting single-stranded DNA viruses that occur in most parts of the world. Currently, there are seven genera within the family Geminiviridae (Becurtovirus, Begomovirus, Curtovirus, Eragrovirus, Mastrevirus, Topocuvirus and Turncurtovirus). The rate of discovery of new geminiviruses has increased significantly over the last decade as a result of new molecular tools and approaches (rolling-circle amplification and deep sequencing) that allow for high-throughput workflows. Here, we report the establishment of two new genera: Capulavirus, with four new species (Alfalfa leaf curl virus, Euphorbia caput-medusae latent virus, French bean severe leaf curl virus and Plantago lanceolata latent virus), and Grablovirus, with one new species (Grapevine red blotch virus)...
February 17, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28213871/thieno-2-3-b-pyridine-derivatives-a-new-class-of-antiviral-drugs-against-mayaro-virus
#10
Raquel Amorim, Marcelo Damião Ferreira de Meneses, Julio Cesar Borges, Luiz Carlos da Silva Pinheiro, Lucio Ayres Caldas, Claudio Cesar Cirne-Santos, Marcos Vinícius Palmeira de Mello, Alessandra Mendonça Teles de Souza, Helena Carla Castro, Izabel Christina Nunes de Palmer Paixão, Renata de Mendonça Campos, Ingrid E Bergmann, Viviana Malirat, Alice Maria Rolim Bernardino, Moacyr Alcoforado Rebello, Davis Fernandes Ferreira
Mayaro virus (MAYV) is an arthropod-borne virus and a member of the family Togaviridae, genus Alphavirus. Its infection leads to an acute illness accompanied by long-lasting arthralgia. To date, there are no antiviral drugs or vaccines against infection with MAYV and resources for the prevention or treatment of other alphaviruses are very limited. MAYV has served as a model to study the antiviral potential of several substances on alphavirus replication. In this work we evaluated the antiviral effect of seven new derivatives of thieno[2,3-b]pyridine against MAYV replication in a mammalian cell line...
February 17, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28213870/molecular-characterization-of-bovine-leukemia-virus-from-moldovan-dairy-cattle
#11
Aneta Pluta, Marzena Rola-Łuszczak, Piotr Kubiś, Svetlana Balov, Roman Moskalik, Bhudipa Choudhury, Jacek Kuźmak
Bovine leukemia virus (BLV) is the causative agent of enzootic bovine leukosis (EBL), a disease that has worldwide distribution. Whilst it has been eradicated in most of Western Europe and Scandinavia, it remains a problem in other regions, particularly Eastern Europe and South America. For this study, in 2013, 24 cattle from three farms in three regions of Moldova were screened by ELISA and nested PCR. Of these cattle, 14 which were PCR positive, and these were molecularly characterized based on the nucleotide sequence of the env gene and the deduced amino acid sequence of the encoded gp51 protein...
February 17, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28210815/structural-proteins-of-helicoverpa-armigera-densovirus-2-enhance-transcription-of-viral-genes-through-transactivation
#12
Pengjun Xu, He Yuan, Xianming Yang, Robert I Graham, Kaiyu Liu, Kongming Wu
Herein, we report the identification of putative promoters for the non-structural proteins (NS) and capsid structural proteins (VP) of Helicoverpa armigera densovirus (HaDV2) as well as a potential mechanism for how these promoters might be regulated. For the first time, we report that VP is able to transactivate the VP promoter and, to a lesser degree, the NS promoter in densoviruses. In addition to this, another promoter-like sequence designated P2, when co-transfected with the VP gene, enhanced luciferase activity by approximately 35 times compared to a control...
February 16, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28204897/characterization-of-tomato-apical-stunt-viroid-isolated-from-a-24-year-old-seed-lot-of-capsicum-annuum
#13
J Th J Verhoeven, H M S Koenraadt, M Westenberg, J W Roenhorst
Tomato apical stunt viroid (TASVd) has been identified in a 24-year old seed lot of Capsicum annuum produced in Taiwan. It is the first finding of TASVd in this plant species. The isolate could be discriminated from all reported isolates of TASVd based on its nucleotide sequence, which showed only 94.8% identity with the most related genotype of TASVd. This discrimination was substantiated by phylogenetic analysis. Inoculation of a RNA extract of contaminated seeds to healthy pepper plants showed that the infectivity of the viroid had remained over time...
February 15, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28204896/detection-of-a-novel-gammaherpesvirus-genus-rhadinovirus-in-wild-muntjac-deer-in-northern-ireland
#14
John McKillen, Kayleigh Hogg, Paula Lagan, Cheryl Ball, Simon Doherty, Neil Reid, Lisa Collins, Jaimie T A Dick
This study represents the initial part of an investigation into the potential for non-native, wild, free-living muntjac deer (Muntiacus reevesi) to carry viruses that could be a threat to livestock. A degenerate PCR assay was used to screen a range of tissues from muntjac deer culled in Northern Ireland for the presence of herpesviral nucleic acids. This was followed by sequencing of PCR amplicons and phylogenetic analysis. We report the detection of a novel gammaherpesvirus most closely related to a type 2 ruminant rhadinovirus from mule deer...
February 15, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28204895/complete-nucleotide-sequence-of-solanum-nodiflorum-mottle-virus
#15
Merike Sõmera, Erkki Truve
Solanum nodiflorum mottle virus (SNMoV) was isolated from a small-flowered nightshade (Solanum nodiflorum) in Queensland, Australia. It has been included in the genus Sobemovirus based on virion morphology and serological relationships. Here, we report the sequence of the complete genome of SNMoV. Sequence analysis confirmed that SNMoV has the characteristic genome organization of sobemoviruses. Phylogenetic analysis showed that it clusters most closely with velvet tobacco mottle virus (VTMoV), another sobemovirus native to Australia...
February 15, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28204894/genotype-analysis-of-orf-62-identifies-varicella-zoster-virus-infections-caused-by-a-vaccine-strain-in-children
#16
Byung Ok Kwak, Hoan Jong Lee, Hyun Mi Kang, Chi Eun Oh, Eun Hwa Choi
This study was performed to differentiate vaccine-type strains from wild-type strains and determine the genotype of varicella-zoster virus (VZV) in 51 Korean children. A sequencing analysis of ORF 62 identified two cases of herpes zoster caused by the vaccine-type virus, without a previous history of varicella, 22 months and 5 months after VZV vaccination. The wild-type strain was identified in the remaining children. A genotype analysis of ORF 22 amino acids revealed genotype J in all children except one...
February 15, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28194580/hepatitis-c-virus-genotype-3a-in-a-population-of-injecting-drug-users-in-montenegro-bayesian-and-evolutionary-analysis
#17
Boban Mugosa, Eleonora Cella, Alessia Lai, Alessandra Lo Presti, Aletheia Blasi, Zoran Vratnica, Danijela Vujoševic, Erika Ebranati, Dragan Lauševic, Michele Guarino, Gianguglielmo Zehender, Teresa Milano, Stefano Pascarella, Silvia Spoto, Silvia Angeletti, Massimo Ciccozzi
Few reports are available on HCV molecular epidemiology among IDUs in Eastern Europe, and none in Montenegro. The aim of this study was to investigate the HCV genotype distribution in Montenegro among IDUs and to perform Bayesian and evolutionary analysis of the most prevalent HCV genotype circulating in this population. Sixty-four HCV-positive IDUs in Montenegro were enrolled between 2013 and 2014, and the NS5B gene was sequenced. The Bayesian analysis showed that the most prevalent subtype was HCV-3a. Phylogenetic data showed that HCV-3a reached Montenegro in the late 1990s, causing an epidemic that exponentially grew between the 1995 and 2005...
February 13, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28194527/impairment-of-infectious-laryngotracheitis-virus-replication-by-deletion-of-the-ul-1-gene
#18
M Nadimpalli, S W Lee, J M Devlin, J R Gilkerson, C A Hartley
Infectious laryngotracheitis virus (ILTV) encodes several unique genes, including a pair of unique nuclear proteins UL0 and UL[-1] that are expressed during replication in cell culture. Although the UL0 gene has been shown to be dispensable for replication, the role of UL[-1] has not been elucidated. In this study a deletion mutant of ILTV lacking the UL[-1] gene was constructed using homologous recombination. The coding sequences of the gene were replaced with the gene for enhanced green fluorescent protein and the cytomegalovirus major immediate early promoter element...
February 13, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28190201/first-isolation-and-characterization-of-pteropine-orthoreoviruses-in-fruit-bats-in-the-philippines
#19
Satoshi Taniguchi, Ken Maeda, Taisuke Horimoto, Joseph S Masangkay, Roberto Puentespina, James Alvarez, Eduardo Eres, Edison Cosico, Noriyo Nagata, Kazutaka Egawa, Harpal Singh, Aiko Fukuma, Tomoki Yoshikawa, Hideki Tani, Shuetsu Fukushi, Shinobu Tsuchiaka, Tsutomu Omatsu, Tetsuya Mizutani, Yumi Une, Yasuhiro Yoshikawa, Masayuki Shimojima, Masayuki Saijo, Shigeru Kyuwa
Pteropine orthoreovirus (PRV) causes respiratory tract illness (RTI) in humans. PRVs were isolated from throat swabs collected from 9 of 91 wild bats captured on the Mindanao Islands, The Philippines, in 2013. The nucleic acid sequence of the whole genome of each of these isolates was determined. Phylogenetic analysis based on predicted amino acid sequences indicated that the isolated PRVs were novel strains in which re-assortment events had occurred in the viral genome. Serum specimens collected from 76 of 84 bats were positive for PRV-neutralizing antibodies suggesting a high prevalence of PRV in wild bats in the Philippines...
February 11, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28190200/development-of-a-molecular-assay-for-the-general-detection-of-tospoviruses-and-the-distinction-between-tospoviral-species
#20
Niklas Bald-Blume, Jan H W Bergervoet, Edgar Maiss
A Luminex xTAG-based assay for plant-infecting tospoviruses was developed. The test enables the detection of tospoviruses in general and the differentiation of the four important member species of this genus: Tomato spotted wilt virus, Impatiens necrotic spot virus, the proposed 'Capsicum chlorosis virus' and Watermelon silver mottle virus. The generic tospovirus primers used in this method are also applicable for detection of tospoviruses by basic RT-PCR. We also describe an economic alternative method for the distinction of the four tospoviruses mentioned and of additional member viruses, based on a restriction fragment length polymorphism (RFLP)...
February 11, 2017: Archives of Virology
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