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Biochemical Genetics

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https://www.readbyqxmd.com/read/29450669/association-of-tert-clptm1l-and-8q24-common-genetic-variants-with-gallbladder-cancer-susceptibility-and-prognosis-in-north-indian-population
#1
Saurabh Yadav, Abhijit Chandra, Ashok Kumar, Balraj Mittal
Gallbladder carcinoma (GBC) is one of the common malignancy of the biliary tract. Several genome wide and candidate gene studies have reported associations between multiple cancer types and single-nucleotide polymorphisms on 5p15.33 and 8q24.21 loci. However, predisposition potential of these genetic variants has not been assessed in GBC. We performed the present study to assess the potential of five polymorphisms on 5p15.33 and one on 8q24.21 locus in GBC risk and treatment response in patients undergoing chemoradiotherapy...
February 15, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29445977/a-brief-history-of-biochemical-genetics-50-years-and-a-reflection-about-past-and-present-research-directions
#2
EDITORIAL
Luís Silva
No abstract text is available yet for this article.
February 14, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29435690/angiotensin-converting-enzyme-gene-insertion-deletion-polymorphism-and-cardiometabolic-risk-factors-a-study-among-bhil-tribal-population-from-two-environmental-settings
#3
Divya Mishra, Kiranmala Naorem, Kallur Nava Saraswathy
Studies have investigated the association between angiotensin-converting enzyme (ACE) gene insertion/deletion (I/D) polymorphism and cardiometabolic risk factors (CMRFs), however with varying results, which could be due to ethnicity differences. Therefore, the present study was conducted among Bhil tribal population (a mendelian population with the common gene pool and same sociocultural attributes), residing in two different environmental settings. The study attempts to understand the distribution and extent of association of ACE I/D gene polymorphism with cardiometabolic risk factors among Bhils from rural and urban settings...
February 13, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29388070/aberrant-dna-methylation-in-chronic-myeloid-leukemia-cell-fate-control-prognosis-and-therapeutic-response
#4
REVIEW
Masumeh Maleki Behzad, Saeid Shahrabi, Kaveh Jaseb, Jessika Bertacchini, Neda Ketabchi, Najmaldin Saki
Chronic myeloid leukemia (CML) is a hematopoietic stem cell malignancy characterized by the expression of the BCR-ABL1 fusion gene with different chimeric transcripts. Despite the crucial impact of constitutively active tyrosine kinase in CML pathogenesis, aberrant DNA methylation of certain genes plays an important role in disease progression and the development of drug resistance. This article reviews recent findings relevant to the effect of DNA methylation pattern of regulatory genes on various cellular activities such as cell proliferation and survival, as well as cell-signaling molecules in CML...
January 31, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29388069/development-of-scot-based-scar-marker-for-rapid-authentication-of-taxus-media
#5
Juan Hao, Kaili Jiao, Chenliang Yu, Hong Guo, Yujia Zhu, Xiao Yang, Siyang Zhang, Lei Zhang, Shangguo Feng, Yaobin Song, Ming Dong, Huizhong Wang, Chenjia Shen
Taxus media is an important species in the family Taxaceae with high medicinal and commercial value. Overexploitation and illegal trade have led T. media to a severe threat of extinction. In addition, T. media and other Taxus species have similar morphological traits and are easily misidentified, particularly during the seedling stage. The purpose of this study is to develop a species-specific marker for T. media. Through a screening of 36 start codon targeted (SCoT) polymorphism primers, among 15 individuals of 4 Taxus species (T...
January 31, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29350309/population-genetics-of-the-endangered-and-wild-edible-plant-ottelia-acuminata-in-southwestern-china-using-novel-ssr-markers
#6
Shu Hua Zhai, Gen Shen Yin, Xiao Hong Yang
Ottelia acuminata is an edible aquatic plant species that is endemic to southwestern China. This plant has experienced habitat degradation resulting from environmental change and extensive human disturbance. Determining the genetic variation and genetic structure of O. acuminata populations could help develop strategies to collect, evaluate, utilize and conserve the species. To this end, we genotyped 183 individuals sampled throughout the species distribution using twelve novel nuclear microsatellite loci (nSSRs)...
January 19, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29332266/association-between-the-interferon-gamma-874-t-a-polymorphism-and-the-severity-of-valvular-damage-in-patients-with-rheumatic-heart-disease
#7
Erhan Teker, A Basak Akadam-Teker, Oguz Ozturk, Allison Pinar Eronat, Kivanc Yalin, S Ebru Golcuk, Zehra Bugra
Interferon gamma (IFN-γ) is a multifunctional cytokine that plays an important role in modulating almost all phases of the immune response and may be responsible for the increased valvular fibrosis and calcification in the pathogenesis of rheumatic heart disease (RHD). The aim of this study was to investigate the possible relationship between the IFN-γ +874 T/A polymorphism and the severity of valvular damage in the Turkish population. The IFN-γ genotypes were determined in 152 RHD patients and 151 healthy controls by ARMS-PCR...
January 13, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29322371/relationship-of-parental-genetic-distance-with-heterosis-and-specific-combining-ability-in-sesame-sesamum-indicum-l-based-on-phenotypic-and-molecular-marker-analysis
#8
Sarita K Pandey, Tapash Dasgupta, Abhishek Rathore, Anilkumar Vemula
The genetic distance analysis for selection of suitable parents has been established and effectively used in many crops; however, there is dearth of conclusive report of relationship of genetic distance analysis with heterosis in sesame. In the present study, an attempt was made to estimate the associations of genetic distances using SSR (GDSSR), seed-storage protein profiling (GDSDS) and agro-morphological traits (GDMOR) with hybrid performance. Seven parents were selected from 60 exotic and Indian genotypes based on genetic distance from clustering pattern based on SSR, seed-storage protein, morphological traits and per se performance...
January 10, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29305749/dna-methylation-variability-in-a-single-locus-of-the-rxr%C3%AE-promoter-from-umbilical-vein-blood-at-term-pregnancy
#9
Diana Chávez-Lizárraga, Paola Zárate-Segura, Jorge Beltrán-Montoya, Carmen Canchola-Sotelo, Felipe Vadillo-Ortega, Erika Chavira-Suárez
DNA methylation status of RXRα gene promoter has been correlated with maternal diet during early pregnancy, and associated with offspring's adiposity and bone mineral content. In adult life, increased methylation of RXRα promoter region is associated with myocardium pathologies. Early growth response proteins (EGR) are zinc finger transcription factors associated with several cellular pathways such as inflammation, apoptosis, and cardiopathies. DNA-binding sequences of EGR proteins have been reported in the RXRα gene promoter using chromatin immunoprecipitation methods...
January 6, 2018: Biochemical Genetics
https://www.readbyqxmd.com/read/29264753/the-association-between-apoa5-gene-polymorphisms-and-plasma-lipids-in-the-turkish-cypriot-population-a-possible-biomarker-for-preventing-cardiovascular-diseases
#10
Umut Fahrioğlu, Mahmut Çerkez Ergören
Apolipoprotein A5 (APOA5 or APO A-V) polymorphisms have long been reported to be associated with cardiovascular disease and plasma lipid levels. The present study was undertaken to investigate the relationship between the rs662799, rs3135507, and rs2075291 with biochemical parameters in the Turkish Cypriot population. A total of 100 Turkish Cypriot volunteer subjects (53 female and 47 male), with a mean age of 40.8, participated in the study. A basic biochemical analysis, including serum glucose, total serum cholesterol, HDL-C, LDL-C, and triglycerides, was performed for each participant...
December 20, 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/29260377/characterization-of-gladiolus-germplasm-using-morphological-physiological-and-molecular-markers
#11
Niraj Singh, Ashish K Pal, R K Roy, S K Tewari, Sushma Tamta, T S Rana
Estimation of variability and genetic relationships among breeding materials is one of the important strategies in crop improvement programs. Morphological (plant height, spike length, a number of florets/spike), physiological (chlorophyll content, chlorophyll fluorescence, and rapid light curve parameters) and Directed amplification of minisatellite DNA (DAMD) markers were used to investigate the relationships among 50 Gladiolus cultivars. Cluster analysis based on morphological data, physiological characteristics, molecular markers, and cumulative data discriminated all cultivars into seven, five, seven, and six clusters in the unweighted pair-group method using arithmetic mean (UPGMA) dendrogram, respectively...
December 20, 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/29230615/association-of-604g-a-and-501a-c-ghrelin-and-obestatin-prepropeptide-gene-polymorphisms-with-polycystic-ovary-syndrome
#12
Talaat Dabbaghi Ghaleh, Somayeh Saadat Skandari, Reza Najafipour, Zahra Rashvand, Masoud Darabi, Mehdi Sahmani
Ghrelin hormone has an important role in a wide range of metabolic and non-metabolic processes. Polymorphisms of ghrelin gene could be associated with a large number of diseases. The aim of this study was to evaluate the association of -604G/A and -501A/C polymorphisms in ghrelin and obestatin prepropeptide gene (GHRL) with polycystic ovary syndrome (PCOS) in a sample of Iranian women. One hundred and fifty-two women with PCOS and 162 age-matched apparently healthy women as control group were enrolled in this study...
December 11, 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/29177636/sequence-analysis-and-comparative-bioinformatics-study-of-camelysin-gene-caly-isolated-from-bacillus-thuringiensis
#13
Fateha Irshad, Zahid Mushtaq, Shakeel Akhtar
Bacillus strains have been widely used for the production of fibrinolytic enzymes having role in the treatment of cardiovascular disorders. Purification and overproduction of such enzymes has increased their usage in medical fields including metalloproteinases with the ability to degrade extracellular matrix (ECM). Camelysin, a neutral metalloproteinase has been isolated from different species of bacteria like Bacillus cereus, Bacillus anthracis, and Bacillus thuringiensis with fibrinolytic, collagenolytic and actin degradation activity...
November 24, 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/29124522/retraction-note-to-potential-start-codon-targeted-scot-and-interretrotransposon-amplified-polymorphism-irap-markers-for-evaluation-of-genetic-diversity-and-conservation-of-wild-pistacia-species-population
#14
Karim Sorkheh, Nazanin Amirbakhtiar, Sezai Ercisli
"This article has been retracted by the Publisher in agreement with the Editor-in-Chief, because it contains portions of writings on the same topic already published and without sufficient attribution to these earlier works being given. The principal authors of the paper acknowledged that text from background sources was mistakenly used in this article without proper reference to the original source. Upon investigation carried out according to the Committee on Publication Ethics guidelines, it has been found that the authors have duplicated or rephrased parts from other articles of which the main sources...
December 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/29094225/effect-of-zinc-and-melatonin-on-oxidative-stress-and-serum-inhibin-b-levels-in-a-rat-testicular-torsion-detorsion-model
#15
Atilla Semercioz, Abdulkerim Kasim Baltaci, Rasim Mogulkoc, Mustafa Cihat Avunduk
The present study was aimed to examine the effects of 3-week zinc and melatonin administration on testicular tissue injury and serum Inhibin-B levels caused by unilateral testicular torsion-detorsion in rats. The study was performed on 60 Wistar Albino-type adult male rats. The animals were allocated to 6 groups in equal numbers. 1. Control; 2. Sham; 3. Ischemia-reperfusion; 4. Zinc + ischemia-reperfusion; 5. Melatonin + ischemia-reperfusion; 6. Zinc + melatonin + ischemia-reperfusion. Zinc and melatonin were administered before ischemia-reperfusion at doses of 5 and 3 mg/kg respectively, by intraperitoneal route for a period of 3 weeks...
December 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/29086887/genetic-testing-of-non-familial-deaf-patients-for-cib2-and-gjb2-mutations-phenotype-and-genetic-counselling
#16
Hina Shaikh, Ali M Waryah, Ashok K Narsani, Muhammad Iqbal, Mohsin Shahzad, Yar M Waryah, Naila Shaikh, Amber Mahmood
CIB2 and GJB2 genes variants contribute significantly in familial cases of prelingual recessive hearing loss (HL). This study was aimed to determine the CIB2 and GJB2 variants and associated phenotype in 150 non-familial individuals with HL. After getting informed consent, 150 non-familial deaf patients were enrolled and blood samples were obtained for DNA extraction. Pure tone air conduction audiometry was performed. Coding exons of CIB2 and GJB2 genes were Sanger sequenced. A tetra primer ARMS assay was developed for recurrent CIB2 variant...
December 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/28664349/the-effect-of-citrulline-malate-on-blood-lactate-levels-in-intensive-exercise
#17
Fatih Kiyici, Hüseyin Eroğlu, N Fazil Kishali, Guleda Burmaoglu
The purpose of this study was to examine the effects of Citrulline/Malate supplementation with intensive training on blood lactate level in active handball players. The athletes were subjected to intense training for 4 weeks, 4 days a week, mainly pre-season strength and technique training. In this training period, stimol group (n = 11) athletes were given stimol 3 times a day as 1 g for breakfast, 1 g for lunch, and 1 g for dinner while the placebo group (n = 11) athletes were given only placebo in the same dosage and the same color at the same time...
December 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/28639055/effects-of-kaolin-m-99-099-application-on-antioxidant-and-phenolic-compounds-in-tea-leaves-camellia-sinensis-l-o-kuntze
#18
Keziban Yazici, Burcu Goksu
In this study, the effects of kaolin (M-99-099) applications on the total phenolic and antioxidant contents of tea leaves (Camellia sinensis (L.) O. Kuntze) harvested in three different periods were investigated. For this purpose, four different strategies including standard fertilizer application (T), 3% kaolin+standard fertilizer application (Ka1), 6% kaolin+standard fertilizer application (Ka2), and control (C) (nothing applied) were used to compare the effects of these strategies on total phenolic content, FRAP values, and DPPH radical scavenging capacities of tea leaves...
December 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/28639054/a-strong-relationship-between-oral-squamous-cell-carcinoma-and-dna-repair-genes
#19
Hakan Avci, Arzu Ergen, Elif Sinem Bireller, Baris Ertugrul, Bedia Cakmakoglu
Single nucleotide polymorphisms of DNA repair genes alter protein function and modulate DNA repair efficiency in various cancers. The X-ray repair cross-complementing group (XRCC) is responsible for the repair of DNA base damage and single-strand breaks. The aim of our study was to investigate the association of XRCC1 Arg399Gln and XRCC3 Thr241Met polymorphisms with the susceptibility to develop oral squamous cell carcinoma (OSCC) in Turkish subjects. One hundred eleven patients with OSCC and 148 healthy controls were recruited for the study...
December 2017: Biochemical Genetics
https://www.readbyqxmd.com/read/28478603/genetic-diversity-in-various-accessions-of-pineapple-ananas-comosus-l-merr-using-issr-and-ssr-markers
#20
Jian-Sheng Wang, Jun-Hu He, Hua-Rui Chen, Ye-Yuan Chen, Fei Qiao
Inter simple sequence repeat (ISSR) and simple sequence repeat (SSR) markers were used to assess the genetic diversity of 36 pineapple accessions that were introduced from 10 countries/regions. Thirteen ISSR primers amplified 96 bands, of which 91 (93.65%) were polymorphic, whereas 20 SSR primers amplified 73 bands, of which 70 (96.50%) were polymorphic. Nei's gene diversity (h = 0.28), Shannon's information index (I = 0.43), and polymorphism information content (PIC = 0.29) generated using the SSR primers were higher than that with ISSR primers (h =  0...
December 2017: Biochemical Genetics
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